View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_6 (Length: 495)
Name: NF1729_low_6
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 26454317 - 26454780
Alignment:
| Q |
18 |
tttctttatgggtgcgcgatgcgtggctactagcacccgttcaacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatc |
117 |
Q |
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| T |
26454317 |
tttctttatggttgcgcgatgcgtggctcctagcacccgttcgacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatc |
26454416 |
T |
|
| Q |
118 |
aacaaaaggtatgtgctaactatacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccacatagttgtttgttttaggtgatttgttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26454417 |
aacaaaaggtatgtgctaactatacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccccatagttgtttgttttaggtgatttgttg |
26454516 |
T |
|
| Q |
218 |
tggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454517 |
tggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactc |
26454616 |
T |
|
| Q |
318 |
taaaatgtctcctaaattatgctaaaaaatactatgattgattatcatcacgaccacatctcttgtcttcatatgttttcatcattttggattat---tt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
26454617 |
taaaatgtctcctaaattatgctaaaaaatactatgattgattatcatcacgaccacatctcttgtcttcatatgttgtcatcattttggattatttctt |
26454716 |
T |
|
| Q |
415 |
cttcttcaccatcaattatcattatgtcaatactttcatcatcaacgttcaccatgttgcattt |
478 |
Q |
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| T |
26454717 |
cttcttcaccatcaattatcattatgtcaatactttcatcatcaacgttcaccatgttgcattt |
26454780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 24455280 - 24455396
Alignment:
| Q |
207 |
gtgatttgttgtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgc |
306 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||| || || | ||| |||||| |||| ||||||||| | || ||||| | | ||||| ||| |
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| T |
24455280 |
gtgatttgacgtggttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaactcgattaaaaaaattgataacctgc |
24455379 |
T |
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| Q |
307 |
tagaaacactctaaaat |
323 |
Q |
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|| ||| |||||||||| |
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| T |
24455380 |
taaaaaaactctaaaat |
24455396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 13962373 - 13962245
Alignment:
| Q |
217 |
gtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacact |
316 |
Q |
| |
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||||||||||||||||||||| ||| | | || || || || |||||| ||||||| |||||| | |||||||| | | | ||||||||| ||| ||| |
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| T |
13962373 |
gtggttcaaggccttgtgcttcgaatcattctctcatgctcatccattgaattatttgcataaactcgactaaaacaattgagaacttgctaaaaagact |
13962274 |
T |
|
| Q |
317 |
ctaaaatgtctcctaaattatgctaaaaa |
345 |
Q |
| |
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||||||| | | ||||| |||||||||| |
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| T |
13962273 |
ctaaaataacacataaatgatgctaaaaa |
13962245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 43716728 - 43716684
Alignment:
| Q |
171 |
aaaagtgtagcatgaccacatagttgtttgttttaggtgatttgt |
215 |
Q |
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|||||| |||||||||||||||||||| | |||| |||||||||| |
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| T |
43716728 |
aaaagtatagcatgaccacatagttgtctcttttgggtgatttgt |
43716684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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