View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_7 (Length: 475)
Name: NF1729_low_7
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Complemental strand, 7907501 - 7907051
Alignment:
| Q |
17 |
caagcttcttcgtgcctaagaaataatgttcaattctcattgtcgatgaaaattgaagcttatactcgattcaatcataaatttggaaaccaaattaagt |
116 |
Q |
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| T |
7907501 |
caagcttcttcgtgcctaagaaataatgttcaattctcattgtcgatgaaaattgaagcttatactcgattcaatcataaatttggaaaccaaattaagt |
7907402 |
T |
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| Q |
117 |
aaatgaactatatatgtcttcgtaattgtggaataaatcgaggaatcaacaagcgttcgacatatttttgatatgttttttctgcatcatcgttcaactt |
216 |
Q |
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| T |
7907401 |
aaatgaactatatatgtcttcgtaattgtggaataaatcgaggaatcaacaagcgttcgacatatttttgatatgttttttctgcatcatcgttcaactt |
7907302 |
T |
|
| Q |
217 |
agtttttaattcaaaaccattggggtttagaatggtttgcaactctccaatctaatatttttaagacaatcatgaatgtatttttgcattgtagaaattc |
316 |
Q |
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| T |
7907301 |
agtttttaattcaaaaccattggggtttagaatggtttgcaactctccaatctaatatttttaagacaatcatgaatgtatttttgcattgtaaaaattc |
7907202 |
T |
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| Q |
317 |
acaatgtagaatagagaactcaactggagtgaataaagagagaaatgaatctaaaggaaaatttgattctattgaatgaatgaaagtaaagtacataata |
416 |
Q |
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| T |
7907201 |
acaatgtagaatagaaaactcaactggagtgaataaagagagaaatgaatctaaaggaaaatttgattctattgaatgaatgaaagtaaagtacataata |
7907102 |
T |
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| Q |
417 |
cacatttatagatgagttactctaactaactcttccatgtatgatattctt |
467 |
Q |
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| T |
7907101 |
cacatttatagatgagttactctaactaactcttccatgtatgattttctt |
7907051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 32851334 - 32851402
Alignment:
| Q |
233 |
ccattggggtttagaatggtttgcaactctccaatctaatatttttaagacaatcatgaatgtattttt |
301 |
Q |
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| T |
32851334 |
ccattggggttgagactggtttgcagctctccaatctgaactttttaagcaaatcatgaatgtattttt |
32851402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 37174477 - 37174545
Alignment:
| Q |
233 |
ccattggggtttagaatggtttgcaactctccaatctaatatttttaagacaatcatgaatgtattttt |
301 |
Q |
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| T |
37174477 |
ccattggggttgagactggtttgcagctctccaatctgaactatttaagcaaatcatgaatgtattttt |
37174545 |
T |
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