View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_8 (Length: 437)
Name: NF1729_low_8
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 40093197 - 40093409
Alignment:
| Q |
14 |
cataggcatcgattggaattttaagctgctgcatgtctaaactactaaaccgttcttggatatgctgtctatattctatacatgtaattttatttacgta |
113 |
Q |
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| T |
40093197 |
cataggcatcgattagaattttaagctgctgcatgtgtaaactactaaaccgttcttggatatgctgtctatattctatacatgtaattttatttacgtg |
40093296 |
T |
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| Q |
114 |
gactactccattcagttattaattacagtagtaacattcaaatttaatttaacttttattttgatttcatcaaatgccaaaaagactataaaaactcttt |
213 |
Q |
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| T |
40093297 |
gactactccattcagttattaattacagtagtaacattcaaatttaatttaacttttattttgatttcatcaaatgccataaagactataaaaactcttt |
40093396 |
T |
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| Q |
214 |
aattgatattcaa |
226 |
Q |
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| T |
40093397 |
aattgatattcaa |
40093409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 238 - 421
Target Start/End: Original strand, 40093433 - 40093616
Alignment:
| Q |
238 |
acaaatgatattcaacatgttatcttcaacttatttccaagagatactcgtttaatatttctttattgataaattaaatttagggtgaggggatgtcaat |
337 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40093433 |
acaaatgatattcaacatgttatcttcaacttattttcatgagatactcgtttaatatttctttattgataaattaaatttaaggtgaggggatgtcaat |
40093532 |
T |
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| Q |
338 |
ccaaggtagaaaagaccaacgggttcatagaacgcttacaaatccatttatatttaaatatcctcctaaattatatttattagt |
421 |
Q |
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| T |
40093533 |
ccaaggtagaaaagaccaacgggctcatagaacgcttacaaattcatttatatttaaatatcctcctaaattatatttattagt |
40093616 |
T |
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