View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1730-Insertion-2 (Length: 479)
Name: NF1730-Insertion-2
Description: NF1730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1730-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 139 - 440
Target Start/End: Original strand, 1434807 - 1435106
Alignment:
| Q |
139 |
gggtatccaacttcatattggtcggagcaaaactgaactcgaatcccttaagtaaggtctccggtttctagagacaacatggttgggatgggagacttcc |
238 |
Q |
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| T |
1434807 |
gggtatccaacttcacattggtctgagcaaaactgaactcgaatcccttaagtaaggtctccggtttctagagacaacatggttgggatgggagacttcc |
1434906 |
T |
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| Q |
239 |
catacataaacacaggttctccgacacagattagttatcaacgaaaaacattaaaagaaccaatgaatatttggcaacagttacatagtaatcaacaaaa |
338 |
Q |
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| T |
1434907 |
ccgacataaacacaggttctccgacacagattaattatcaacgaaaaacattaaaagaaccaatgaatgtttgacaacaattacatagtaatcaacaaaa |
1435006 |
T |
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| Q |
339 |
aatatttttnnnnnnnntcaatagtaatgaaaatcacataccttaaacaagaaaggtagatcagaaccccatttcttaacaactttatgaccaagcaaca |
438 |
Q |
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| T |
1435007 |
a--actttaaaaaaaaatcaatagttatgaaaatcacataccttaaacaagaaaggtagatcagaaccccatttcttaacaactttatgaccaagcaaca |
1435104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 1434674 - 1434740
Alignment:
| Q |
7 |
acggacgtgttaaacagccccggacactcatagacgccttcaa-cctcaagtgtcggtgctacatag |
72 |
Q |
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| T |
1434674 |
acggacgtgttaaacagcacctgacactcagagacgccttcaaccctcaagtgtcggtgctacatag |
1434740 |
T |
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