View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1730-Insertion-5 (Length: 764)
Name: NF1730-Insertion-5
Description: NF1730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1730-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 8 - 764
Target Start/End: Complemental strand, 10403596 - 10402840
Alignment:
| Q |
8 |
atgattgtagaacttgcctaagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatattag |
107 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10403596 |
atgattgtagaacttgtctaagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatattag |
10403497 |
T |
|
| Q |
108 |
gtatgaattttaccctttttatctatccaatagcattggttcatcaatagatactacatcacaacaaattctacttccacaaacaaaaacttcagaacac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10403496 |
gtatgaattttaccctttttatctatccaatagtattggttcatcaatagatactacatcacaacaaattctacttccacaaacaaaaacttcagaacac |
10403397 |
T |
|
| Q |
208 |
cctttttacctttcacacaattgttcaagtaataacaaaaccttcacttttaacaacactttcaaagttcaccttacaacccttttttcttacctgtctt |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10403396 |
cctttttacctttcacacaattgttcaagtaataacaaaaccttcacttttaacaacactttcaaagttcaccttacaacccttttttcttacttgtctt |
10403297 |
T |
|
| Q |
308 |
ctaatgccactaaaagcatatttcataaagatgatgtggatggtacaatatttggactcttcatgtgtcgtggtaatgttcccttttacttatgtgaaca |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10403296 |
ctaatgccactaaaagcatatttcataaagatgatgtggatggtacaatatttggactcttcatgtgtcgtggtgatgttcccttttacttatgtgaaca |
10403197 |
T |
|
| Q |
408 |
atgtgtgcaaaatgcaacacatcaaataacccaaaagtgtaacatttttcaagagggtataatatggtttaatcaatgcatgattagatattcctattgg |
507 |
Q |
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| T |
10403196 |
atgtgtgcaaaatgcaacacataaaataacccaaaagtgtaacatttttcaagagggtataatatggtttaatcaatgcatgattagatattcctattgg |
10403097 |
T |
|
| Q |
508 |
aatttcttctctttagtggacaaaagtcatgtgtatcatgaaatgaatgttactagtgattctagtcccaaaaaggagagaaacttgtataattttgtaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10403096 |
aatttcttctctttagtggacaaaagtcatgtgtatcatgaaatgaatgttactggtgattctagtcccaaaaaggagagaaacttgtataattttgtaa |
10402997 |
T |
|
| Q |
608 |
tatcaaatgccttatcaaaagtggcaattgtagctggggatagtgataagagatatggaacaaaatcattgaaattgaatgatttgcaaacactttatac |
707 |
Q |
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| T |
10402996 |
tatcaaatgccttatcaaaagtggcaattgtggctggggatagtgataagagatatggaacaaaatcattgaaattgaatgatttgcaaacactttatac |
10402897 |
T |
|
| Q |
708 |
acttggtcagtgtacacaagatttatcaagtgatgattgcaaggcttgtttgagtga |
764 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10402896 |
acttggtcagtgtacacaagatttatcaagtgatgattgcaaggcttgtttgagtga |
10402840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 759
Target Start/End: Original strand, 20231309 - 20232072
Alignment:
| Q |
8 |
atgattgtagaacttgcctaagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatattag |
107 |
Q |
| |
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|||| ||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
20231309 |
atgaatgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatattag |
20231408 |
T |
|
| Q |
108 |
gtatgaattttaccctttttatctatccaatagcattggttcatcaatagatactacatcacaacaaattctacttccacaaacaaaaact--------- |
198 |
Q |
| |
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||||||||| |||||||||||| | || | | ||||||||||| || || |||||||||||||| ||||||| |||||||||| | |
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| T |
20231409 |
gtatgaattctaccctttttatatctc---ttctaatggttcatcaa---atccttcatcacaacaaattatacttccccaaacaaaaaatttagatgct |
20231502 |
T |
|
| Q |
199 |
------------tcagaacaccctttttacctttcacacaattgttcaagtaataacaaaaccttcacttttaacaacactttcaaagttcaccttacaa |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
20231503 |
gattcaactatttcagaacaccctttttacctttcacacaattgttc---tagtaacaaaaccttcacttttagtaacactttcaagaaacaccttacaa |
20231599 |
T |
|
| Q |
287 |
cccttttttcttacctgtcttctaatgccactaaaagcatatttcataaagatgatgtggatggtacaatatttggactcttcatgtgtcgtggtaatgt |
386 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||| |||||||||||| ||| || || ||||| ||||||||||||||||| ||||| |||| |
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| T |
20231600 |
cccttttttcctacatgtcttctaatgccactaaaagtctatttcataaagctgaagttgaaaatacaacttttggactcttcatgtgccgtggcgatgt |
20231699 |
T |
|
| Q |
387 |
tcccttttacttatgtgaacaatgtgtgcaaaatgcaacacatcaaataacccaaaagtgtaacatttttcaagagggtataatatggtttaatcaatgc |
486 |
Q |
| |
|
|||||||| |||||||| || |||||| ||||||||||||| ||||| | || |||||||||||||||||||||||||||| |||| || ||||||| |
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|
| T |
20231700 |
tcccttttcgttatgtgagcagtgtgtgaaaaatgcaacacaaagaataagcaaagagtgtaacatttttcaagagggtataatttggtatactcaatgc |
20231799 |
T |
|
| Q |
487 |
atgattagatattcctattggaatttcttctctttagtggacaaaagtcatgtgtatcatgaaatgaatgttactagtgattctagtcccaaaaaggaga |
586 |
Q |
| |
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|||||| | ||||| ||||||||||||||||| |||||||||||| |||||| ||| |||| |||||| |||||||||||||||||||||| ||||||| |
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| T |
20231800 |
atgattcggtattcgaattggaatttcttctctatagtggacaaaactcatgtctattatgagatgaatattactagtgattctagtcccaacaaggaga |
20231899 |
T |
|
| Q |
587 |
gaaacttgtataattttgtaatatcaaatgccttatcaaaagtggcaattgtagctggggatagtgataagagatatggaacaaaatcattgaaattgaa |
686 |
Q |
| |
|
||||||||| |||||||| ||||||| | |||||||||| ||||||||||| || || ||||||||| | |||| ||||||||||||| ||||| |||| |
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|
| T |
20231900 |
gaaacttgttcaattttgttatatcaactaccttatcaaatgtggcaattgtggcaggagatagtgatgaaagatttggaacaaaatcactgaaagtgaa |
20231999 |
T |
|
| Q |
687 |
tgatttgcaaacactttatacacttggtcagtgtacacaagatttatcaagtgatgattgcaaggcttgtttg |
759 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||| |
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| T |
20232000 |
tgatttgcaaacactttatacacttggtcaatgtacacaagatttgtcaagtgatgattgcaaaggttgtttg |
20232072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 759
Target Start/End: Original strand, 22125293 - 22126056
Alignment:
| Q |
8 |
atgattgtagaacttgcctaagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatattag |
107 |
Q |
| |
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|||| ||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
22125293 |
atgaatgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatattag |
22125392 |
T |
|
| Q |
108 |
gtatgaattttaccctttttatctatccaatagcattggttcatcaatagatactacatcacaacaaattctacttccacaaacaaaaact--------- |
198 |
Q |
| |
|
||||||||| |||||||||||| | || | | ||||||||||| || || |||||||||||||| ||||||| |||||||||| | |
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| T |
22125393 |
gtatgaattctaccctttttatatctc---ttctaatggttcatcaa---atccttcatcacaacaaattatacttccccaaacaaaaaatttagatgct |
22125486 |
T |
|
| Q |
199 |
------------tcagaacaccctttttacctttcacacaattgttcaagtaataacaaaaccttcacttttaacaacactttcaaagttcaccttacaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
22125487 |
gattcaactatttcagaacaccctttttacctttcacacaattgttc---tagtaacaaaaccttcacttttagtaacactttcaagaaacaccttacaa |
22125583 |
T |
|
| Q |
287 |
cccttttttcttacctgtcttctaatgccactaaaagcatatttcataaagatgatgtggatggtacaatatttggactcttcatgtgtcgtggtaatgt |
386 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||| |||||||||||| ||| || || ||||| ||||||||||||||||| ||||| |||| |
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|
| T |
22125584 |
cccttttttcctacatgtcttctaatgccactaaaagtctatttcataaagctgaagttgaaaatacaacttttggactcttcatgtgccgtggcgatgt |
22125683 |
T |
|
| Q |
387 |
tcccttttacttatgtgaacaatgtgtgcaaaatgcaacacatcaaataacccaaaagtgtaacatttttcaagagggtataatatggtttaatcaatgc |
486 |
Q |
| |
|
|||||||| |||||||| || |||||| ||||||||||||| ||||| | || |||||||||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
22125684 |
tcccttttcgttatgtgagcagtgtgtgaaaaatgcaacacaaagaataagcaaagagtgtaacatttttcaagagggtataatttggtatactcaatgc |
22125783 |
T |
|
| Q |
487 |
atgattagatattcctattggaatttcttctctttagtggacaaaagtcatgtgtatcatgaaatgaatgttactagtgattctagtcccaaaaaggaga |
586 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| |||||||||||| |||||| ||| |||| |||||| |||||||||||||||||||||| ||||||| |
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| T |
22125784 |
atgattcggtattcgaattggaatttcttctctatagtggacaaaactcatgtctattatgagatgaatattactagtgattctagtcccaacaaggaga |
22125883 |
T |
|
| Q |
587 |
gaaacttgtataattttgtaatatcaaatgccttatcaaaagtggcaattgtagctggggatagtgataagagatatggaacaaaatcattgaaattgaa |
686 |
Q |
| |
|
||||||||| |||||||| ||||||| | |||||||||| ||||||||||| || || ||||||||| | |||| ||||||||||||| ||||| |||| |
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|
| T |
22125884 |
gaaacttgttcaattttgttatatcaactaccttatcaaatgtggcaattgtggcaggagatagtgatgaaagatttggaacaaaatcactgaaagtgaa |
22125983 |
T |
|
| Q |
687 |
tgatttgcaaacactttatacacttggtcagtgtacacaagatttatcaagtgatgattgcaaggcttgtttg |
759 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
22125984 |
tgatttgcaaacactttatacacttggtcaatgtacacaagatttgtcaagtgatgattgcaaaggttgtttg |
22126056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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