View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1730-Insertion-6 (Length: 768)
Name: NF1730-Insertion-6
Description: NF1730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1730-Insertion-6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 476 - 768
Target Start/End: Complemental strand, 48006342 - 48006050
Alignment:
| Q |
476 |
gttgagcttaggtatattgtattgtcttttcaaattttgttttgccacatatagttgcatacatattgaaggtaatctatgttgtgatgtatcaaatgga |
575 |
Q |
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| T |
48006342 |
gttgagcttaggtatattgtattgtcttttcaaattttgttttgccacatatagttgtatacatattgaaggtaatctatgttgtgatgtatcaaatgga |
48006243 |
T |
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| Q |
576 |
actcaaaagacacactacattggatggaagaggggttgaaaaacatcataggactcataaactcattccatttgaactttaggttttgtttgttaaaata |
675 |
Q |
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| T |
48006242 |
actcaaaagacatactacattggatggaagaggggttgaaaaacatcataggattcataaactcattgcatttgaactttaggttttgtttgataaaata |
48006143 |
T |
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| Q |
676 |
taaaggatagttaatacaatggtttatagaggataaaaatgaaaacattttctcaaagagcttagtttataataaaccctttagtatgtatta |
768 |
Q |
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| T |
48006142 |
taaaggatagttaatacgatggtttatagcggataaaaatgaaaacattttctcaaagagcttagtttataataaacccattagtatgtatta |
48006050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 48006861 - 48006600
Alignment:
| Q |
8 |
atgcatacttgtttaccgtaactgttagtgccattaacatggtttgccctatagaactcatcgcctcttctctttttagtttgcttaatagcttatccta |
107 |
Q |
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| T |
48006861 |
atgcatacttgtttaccgtaactgttagtgccattaacatggtttgccctatagaactcatcgcctcttctctttttagtttgcttaatagcttatccta |
48006762 |
T |
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| Q |
108 |
aaggataatgaacatgtggtagcctattactttgtgcttcatatttatgtacataaggacaaaaactatataatggatgatttgcttcaatttcattttt |
207 |
Q |
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| T |
48006761 |
aaggataatgaacatgtggtagcctagtacattgtgcttcatatttatgtacataaggacaaaaactatataatggatgatttgcttcaatttcattttt |
48006662 |
T |
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| Q |
208 |
acttcaactaataaacataaatttagtccacctttttcttttacaatttgttaaaataaatc |
269 |
Q |
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| T |
48006661 |
acttcaactaataaacataaatttagtccacctttttcttttacaatttgttaaaacaaatc |
48006600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 304 - 478
Target Start/End: Complemental strand, 48006578 - 48006401
Alignment:
| Q |
304 |
aaatggaaaaacattgttttcattcttagtc---cttagtttaagctaattgacgtttttatcgctgagcctggccatatcgtcttttcaaaattgagcc |
400 |
Q |
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| T |
48006578 |
aaatggaaaaacattgttttcattcttagtcgtccttagtttaagctaattgacgtttttatcgctgagcctggccatatcgtcttttcaaaattgaccc |
48006479 |
T |
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| Q |
401 |
aacttttggtcttaaactaaagactaggggtccggttaagtaaaaaggccaattagcttaagctaaaaactaatagtt |
478 |
Q |
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| T |
48006478 |
aacttttggtcttaaactaaagactaggggtccggttaagtaaaaatgccaattagcttaagctaaaaactaatagtt |
48006401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 5e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 1603478 - 1603357
Alignment:
| Q |
12 |
atacttgtttaccgtaactgttagtgccattaacatggtttgccctatagaactcatcgcctcttctctttttagtttgcttaatagcttatcctaaagg |
111 |
Q |
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| T |
1603478 |
atacttgtttaccgtaactgttagtgccattaacatggtttgccctataaaactcatcgcctcttctctttttagtttgtttaataacttatcctaaagg |
1603379 |
T |
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| Q |
112 |
ataatgaacatgtggtagccta |
133 |
Q |
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| T |
1603378 |
ataatgaacatgtggtagccta |
1603357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 41317354 - 41317383
Alignment:
| Q |
198 |
tttcatttttacttcaactaataaacataa |
227 |
Q |
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| T |
41317354 |
tttcatttttacttcaactaataaacataa |
41317383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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