View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1730-Insertion-8 (Length: 973)

Name: NF1730-Insertion-8
Description: NF1730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1730-Insertion-8
NF1730-Insertion-8
[»] chr2 (2 HSPs)
chr2 (213-973)||(4676332-4677093)
chr2 (7-149)||(4676117-4676268)


Alignment Details
Target: chr2 (Bit Score: 715; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 213 - 973
Target Start/End: Original strand, 4676332 - 4677093
Alignment:
Q  213 ctcccccatttttaaagaaaaaactactgataacatttagaatatagatttacctggtttcgggcactggtcttattgaagggagatcgtggatcttcag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4676332 ctcccccatttttaaagaaaaaactactgataacatttagaatatagatttacctggtttcgggcactggtcttactgaagggagatcgtggatcttcag 4676431  T
Q  313 aagtataaatggagtaccaaccttgatgcactttaggatcattaatattattgctattaccaaatactttaggagcagaaaccaaaagaaactgaagatc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676432 aagtataaatggagtaccaaccttgatgcactttaggatcattaatattattgctattaccaaatactttaggagcagaaaccaaaagaaactgaagatc 4676531  T
Q  413 attaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatctttcccttcatcattagccacagcaacaaat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676532 attaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatctttcccttcatcattagccacagcaacaaat 4676631  T
Q  513 ccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacattgatttcggaagtcgcataaataaattttg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676632 ccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacattgatttcggaagtcgcataaataaattttg 4676731  T
Q  613 tcacrgaatatttaaaaggatttccattttctnnnnnnnctttagaaaagaaatcattctttgcatacctacaactacctgcaaactttgatgctttctc 712  Q
    |||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676732 tcacagaatatttaaaaggatttccattttctaaaaaaactttagaaaagaaatcattctttgcatacctacaactacctgcaaactttgatgctttctc 4676831  T
Q  713 tgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatgtcaagagggtctaatagacctatccaatga 812  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676832 tgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatgtcaagagggtctaatagacctatccaatga 4676931  T
Q  813 ttttcaccactgagttgttgccatttgtttgctatgttgctgctgttgtttggtttcttcttcttcaaattgtttctccatcttttgatcatgattgcta 912  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676932 ttttcaccactgagttgttgccatttgtttgctatgctgctgctgttgtttggtttcttcttcttcaaattgtttctccatcttttgatcatgattgcta 4677031  T
Q  913 ctctgcttgg-ttttttatgtatggagccggagaggccttcaccttcatatatactacgtac 973  Q
    |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  4677032 ctctgcttggtttttttatgtatggaaccagagaggccttcaccttcatatatactacgtac 4677093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 4676117 - 4676268
Alignment:
Q  7 atattttacatatgaacataatgaaacactagtatatggcatgga---------tatatttgattcaaagatctctttcaaagtttggcaaccagatggt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||||||||||||    
T  4676117 atattttacatatgaacataatgaaacactagtatatggcatggacagaaaggatatatttgattcaaatatctctttcaaagtttggcaaccagatggt 4676216  T
Q  98 ttatgaaaaaggccaatcacctatatttgctttatcgagcatcatcacacaa 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676217 ttatgaaaaaggccaatcacctatatttgctttatcgagcatcatcacacaa 4676268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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