View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17300_high_1 (Length: 369)
Name: NF17300_high_1
Description: NF17300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17300_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 36913271 - 36913622
Alignment:
| Q |
1 |
cacatttcattcgtctcggcagcttgccctgacgttccagcatttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36913271 |
cacatttcattcgtctcggcagcttgccttgacgttccagcatttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttc |
36913370 |
T |
|
| Q |
101 |
aatcatacacaattgcaaacttaaaaatatacgatttgagagcaccaccgaatattcttcaaatgatttcacaaccgcattcacaagctcgtcaacagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36913371 |
aatcatacacaattgcaaacttaaaaatatacgatttgagagcaccaccgaatattcttcaaatgatttcacaaccgcattcacaagctcgtcaacagat |
36913470 |
T |
|
| Q |
201 |
ttaggtgccttcttatgttgtaaagattgaatggctctgaaaaatccaagatccaaaatatttaaatctggagagtttgcaggctgacacattagtcgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36913471 |
ttaggtgccttcttatgttgtaaagattgaatagctctgaaaaatccaagatccaaaatatttaaatctggagagtttgcaggctgacacattagtcgaa |
36913570 |
T |
|
| Q |
301 |
tatcaaatccattttgtgaagctgctctacaaaaatcttcattatcacaact |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36913571 |
tatcaaatccattttgtgaagctgctctacaaaaatcttcatcatcacaact |
36913622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 319
Target Start/End: Complemental strand, 23254853 - 23254690
Alignment:
| Q |
156 |
tcttcaaatgatttcacaaccgcattcacaagctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatggctctgaaaaatccaagatcca |
255 |
Q |
| |
|
||||||||||| || ||| |||| |||||| || |||||||| ||||| | |||||| |||||||| | |||||| | || || || |||||||| |
|
|
| T |
23254853 |
tcttcaaatgacttttgaactgcatccacaagatcatcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatctt |
23254754 |
T |
|
| Q |
256 |
aaatatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtga |
319 |
Q |
| |
|
||| ||||||||| |||||||||| || |||| || | ||||||||||||||||||||||| |
|
|
| T |
23254753 |
aaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatccattttgtga |
23254690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 11166568 - 11166935
Alignment:
| Q |
1 |
cacatttcattcgtctcggcagcttgccctgacgttccagcatttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11166568 |
cacatttcattcgtctcggcaacttgccttgacgttccagcatttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttc |
11166667 |
T |
|
| Q |
101 |
aatcatacacaattgcaaacttaaaaatatacgatttgagagcaccaccgaatattcttcaaatgatttcacaaccgcattcacaagctcgtcaaca--- |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11166668 |
aatcatacacaattgcaaacttaaaaataaacgatttgagagcaccaccgaatattcttcaaatgatttcacaaccgcattcacaagctcgtcaacagat |
11166767 |
T |
|
| Q |
198 |
------------gatttaggtgccttcttatgttgtaaagattgaatggctctgaaaaatccaagatcc-aaaatatttaaatctggagagtttgcaggc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11166768 |
ttaggtgccttcgatttaggtgccttcttatgttgtaaagattgaatagctctgaaaaatccaagatccaaaaatatttaaatctggagagtttgcaggc |
11166867 |
T |
|
| Q |
285 |
tgacacattagtcgaatatcaaatccattttgtgaagctgctctacaaaaatcttcattatcacaact |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11166868 |
tgacacattagtcgaatatcaaatccattttgtgaagctgctctacaaaaatcttcatcatcacaact |
11166935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 319
Target Start/End: Complemental strand, 42917963 - 42917800
Alignment:
| Q |
156 |
tcttcaaatgatttcacaaccgcattcacaagctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatggctctgaaaaatccaagatcca |
255 |
Q |
| |
|
||||||||||| || ||| |||| |||||| || |||||||| ||||| | |||||| |||||||| | |||||| | || || || |||||||| | |
|
|
| T |
42917963 |
tcttcaaatgacttttgaactgcatccacaagatcatcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatcta |
42917864 |
T |
|
| Q |
256 |
aaatatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtga |
319 |
Q |
| |
|
||| ||||||||| |||||||||| || |||| || | ||||||||||||||||||||||| |
|
|
| T |
42917863 |
aaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatccattttgtga |
42917800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 318
Target Start/End: Original strand, 8695668 - 8695828
Alignment:
| Q |
158 |
ttcaaatgatttcacaaccgcattcacaagctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatggctctgaaaaatccaagatccaaa |
257 |
Q |
| |
|
|||||| || |||||||| ||||| ||||| || |||| || ||||||||| | ||| | || || ||||| || || |||||||||||||| || || |
|
|
| T |
8695668 |
ttcaaacgacttcacaactgcattgacaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactgaaaaatccaaggtcgaag |
8695767 |
T |
|
| Q |
258 |
atatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtg |
318 |
Q |
| |
|
| ||| |||||||| || || | |||||||||||||| || || |||||||||| ||||| |
|
|
| T |
8695768 |
acattaaaatctggcgaattaggaggctgacacattaaacggatgtcaaatccatcttgtg |
8695828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 316
Target Start/End: Original strand, 30460700 - 30460887
Alignment:
| Q |
129 |
atacgatttgagagcaccaccgaatattcttcaaatgatttcacaaccgcattcacaagctcgtcaacagatttaggtgccttcttatgttgtaaagatt |
228 |
Q |
| |
|
||||||||||| |||| | ||| || ||||||| |||||| | ||||| |||||||| || ||||| || ||||| | || ||||||||||| ||| |
|
|
| T |
30460700 |
atacgatttgacttcaccgctgaaaatgcttcaaaagatttctccaccgctttcacaagttcatcaaccgaattaggagactctttatgttgtaaggatc |
30460799 |
T |
|
| Q |
229 |
gaatggctctgaaaaatccaagatccaaaatatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttg |
316 |
Q |
| |
|
| || || || ||| || ||||||| |||||||||||||||||||| ||||| || |||||||||| ||||| ||||||||| |||| |
|
|
| T |
30460800 |
ggatagcactaaaatattcaagatctaaaatatttaaatctggagaatttgccggttgacacattaaacgaatgtcaaatccactttg |
30460887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 319
Target Start/End: Complemental strand, 53535885 - 53535610
Alignment:
| Q |
44 |
ttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttcaatcatacacaattgcaaacttaaaaatatacgatttgagagc |
143 |
Q |
| |
|
|||||||||||| || ||||| | || |||| || |||| || |||||||||||||||||||||| |||| | |||||||||||||||||| || |
|
|
| T |
53535885 |
ttctttcttcatatgtggaatcttgtagttgtgggtaccttttactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacagg |
53535786 |
T |
|
| Q |
144 |
accaccgaatattcttcaaatgatttcacaaccgcattcacaagctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatggctctgaaaa |
243 |
Q |
| |
|
| ||| ||||||||||| || ||| |||| |||||| || |||||||| ||||| | |||||| |||||||| | |||||| | || || | |
|
|
| T |
53535785 |
atagtgtcatactcttcaaatgacttttgaactgcatccacaagatcatcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaaga |
53535686 |
T |
|
| Q |
244 |
atccaagatccaaaatatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtga |
319 |
Q |
| |
|
| |||||||| ||| ||||||||| |||||||||| || |||| || | ||||||||||||||||||||||| |
|
|
| T |
53535685 |
aaccaagatcttaaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatccattttgtga |
53535610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 318
Target Start/End: Original strand, 34223457 - 34223617
Alignment:
| Q |
158 |
ttcaaatgatttcacaaccgcattcacaagctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatggctctgaaaaatccaagatccaaa |
257 |
Q |
| |
|
|||||| || |||||||| ||||| ||||| || |||| || ||||||||| | ||| | || || ||||| || || |||||||||||||| ||||| |
|
|
| T |
34223457 |
ttcaaacgacttcacaactgcattgacaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactgaaaaatccaaggtccaag |
34223556 |
T |
|
| Q |
258 |
atatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtg |
318 |
Q |
| |
|
| ||| |||||||| || || | |||||||||||||| || || |||||||||| ||||| |
|
|
| T |
34223557 |
acattaaaatctggcgaattaggaggctgacacattaaacggatgtcaaatccatcttgtg |
34223617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 319
Target Start/End: Complemental strand, 4755507 - 4755344
Alignment:
| Q |
156 |
tcttcaaatgatttcacaaccgcattcacaagctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatggctctgaaaaatccaagatcca |
255 |
Q |
| |
|
||||||||||| || ||| |||| ||||| || |||||||| ||||| | |||||| |||||||| | |||||| | || || || |||||||| | |
|
|
| T |
4755507 |
tcttcaaatgacttttgaactgcatccacaatatcatcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatcta |
4755408 |
T |
|
| Q |
256 |
aaatatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtga |
319 |
Q |
| |
|
||| ||||||||| |||||||||| || |||| || | ||||||||||||||||||||||| |
|
|
| T |
4755407 |
aaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatccattttgtga |
4755344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University