View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17300_high_5 (Length: 269)
Name: NF17300_high_5
Description: NF17300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17300_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 50822259 - 50822508
Alignment:
| Q |
12 |
atcacattgttgattgatttttgacttttttgtatcatatctgatgatgagagatgatgctgatgcatcatcaatggtaacattctcaaaaagttgcttt |
111 |
Q |
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| T |
50822259 |
atcacattgttgattgatttttgacttttttgtatcatatctgatgatgagagatgatgctgatgcatcatcaatggtaacattctcaaaaagttgcttt |
50822358 |
T |
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| Q |
112 |
tgtaaatcatcaaaacatcccttacacgaattgctgcagaaagtattaagccccataatcacataatctatacaagcaatattacacaacccacacctta |
211 |
Q |
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| T |
50822359 |
tgtaaatcatcaaaacatcccttacacgaattgctgcagaaagtattaagccccataatcacataatctatacaagcaatattacacaacccacacctta |
50822458 |
T |
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| Q |
212 |
gcattccctcttcatcaagagtttccatggaaacgaagtcatccacctct |
261 |
Q |
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| T |
50822459 |
gcattccctcttcatcaagagtttccatggaaacgaagtcatccacctct |
50822508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 50853602 - 50853353
Alignment:
| Q |
12 |
atcacattgttgattgatttttgacttttttgtatcatatctgatgatgagagatgatgctgatgcatcatcaatggtaacattctcaaaaagttgcttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853602 |
atcacattgttgattgatttttgacttttttgtatcatatctgatgatgagagatgatgctgatgcatcatcaatggtaacattctcaaaaagttgcttt |
50853503 |
T |
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| Q |
112 |
tgtaaatcatcaaaacatcccttacacgaattgctgcagaaagtattaagccccataatcacataatctatacaagcaatattacacaacccacacctta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853502 |
tgtaaatcatcaaaacatcccttacacgaattgctgcagaaagtattaagccccataatcacataatctatacaagcaatattacacaacccacacctta |
50853403 |
T |
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| Q |
212 |
gcattccctcttcatcaagagtttccatggaaacgaagtcatccacctct |
261 |
Q |
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| T |
50853402 |
gcattccctcttcatcaagagtttccatggaaacgaagtcatccacctct |
50853353 |
T |
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