View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17300_low_2 (Length: 359)
Name: NF17300_low_2
Description: NF17300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17300_low_2 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 36912851 - 36913200
Alignment:
| Q |
9 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatgg |
108 |
Q |
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| T |
36912851 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatgg |
36912950 |
T |
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| Q |
109 |
tgttgtgtttttgtttatcgtgaactttaattttatgttggtttctgttgttggtaagacatgttttatttatatcaatgctagcagcttttcttttcct |
208 |
Q |
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| T |
36912951 |
tgttgtgtttttgtttatcgtgaactttaattttatgttggtttctgttgttggtaagacatgttttatttatatcaatgctagcagcttttcttttcct |
36913050 |
T |
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| Q |
209 |
gttatatgcaaagccagctttcctttatttatatcaatctcgcattttccttatttgagttgcaatggagtggccactacatgcccattattcaagtcag |
308 |
Q |
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| T |
36913051 |
gttatatgcaaagccagctttcctttatttatatcaatctcgcattttccttatttgagttgcaatggagtggccactacatatccattattcaagtcag |
36913150 |
T |
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| Q |
309 |
gaattnnnnnnnntgtgtaaaagaaaattactctaaattaagacaaaccat |
359 |
Q |
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| T |
36913151 |
gaatt-aaaaaaatgtgtaaaagaaaattactctaaataaagacaaaccat |
36913200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 11166148 - 11166497
Alignment:
| Q |
9 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatgg |
108 |
Q |
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| T |
11166148 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatgg |
11166247 |
T |
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| Q |
109 |
tgttgtgtttttgtttatcgtgaactttaattttatgttggtttctgttgttggtaagacatgttttatttatatcaatgctagcagcttttcttttcct |
208 |
Q |
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| T |
11166248 |
tgttgtgtttttgtttatcgagaactttaattttatgttggtttctgttgttggtaagacatgttttatttatatcaatgctagcagcttttcttttcct |
11166347 |
T |
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| Q |
209 |
gttatatgcaaagccagctttcctttatttatatcaatctcgcattttccttatttgagttgcaatggagtggccactacatgcccattattcaagtcag |
308 |
Q |
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| T |
11166348 |
gttatatgcaaagccagctttcctttatttatatcaatctcgcattttccttatttgagttgcaatggaatggccactacataaccattattcaagtcag |
11166447 |
T |
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| Q |
309 |
gaattnnnnnnnntgtgtaaaagaaaattactctaaattaagacaaaccat |
359 |
Q |
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| T |
11166448 |
gaatt-aaaaaaatgtgtaaaagaaaattactctaaataaagacaaaccat |
11166497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 5474820 - 5474768
Alignment:
| Q |
139 |
ttttatgttggtttctgttgttggtaagacatgttttatttatatcaatgcta |
191 |
Q |
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| T |
5474820 |
ttttattttggtttgtgttgttggtaagacatgttttatgaataacaatgcta |
5474768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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