View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17300_low_3 (Length: 328)
Name: NF17300_low_3
Description: NF17300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17300_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8283539 - 8283230
Alignment:
| Q |
1 |
aataataagttgagggagttgtttaaaaaccagttaagagggaagagttgaggccttgagaattccgttggttcgacgcattggtagacttcttgaacat |
100 |
Q |
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| T |
8283539 |
aataataattagagggagttgtttaaaaaccagttaagagggaagagttgaggccttgagaattccgttggttggacgcattggtagacttcttgaacat |
8283440 |
T |
|
| Q |
101 |
gctaggccaatgtttgttcgaggaagtcatcactgatcgatcgatgatttgcttggatcgatcgacaaattatgagaaattattgaactggaagctagat |
200 |
Q |
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| T |
8283439 |
gctaggccaatgtttgttcgaggaagtcatcactgatcgatcgatgatttgcttggatcgatcgacaaattatgagaaattattgaactggaagctagat |
8283340 |
T |
|
| Q |
201 |
atcaaaagacacagagaaaattataagagacagaagcactaaaattgataataaagcagatactaactgaaatacataatacagtgtatgacataaaaac |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8283339 |
atcaaaagacac--agaaaattataagagacagaagcactaaaattgataataaagcagatactaactgaaatacataatacagtgtatgacataaaaac |
8283242 |
T |
|
| Q |
301 |
ggaagataaaag |
312 |
Q |
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|||||||||||| |
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| T |
8283241 |
ggaagataaaag |
8283230 |
T |
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