View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17301_high_1 (Length: 658)
Name: NF17301_high_1
Description: NF17301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17301_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 273 - 642
Target Start/End: Original strand, 11838778 - 11839148
Alignment:
| Q |
273 |
ctattttcggtcctatttataagaaacatttagattaatatatttagatcaaattttaaactagattcagtaacttttgttgatcaacgtatcttttata |
372 |
Q |
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| T |
11838778 |
ctatttttggtcctatttataagaaacatttagattaatatatctagatcaaattttaaactagattcattaatttttgttgatcaacgtgtcttttata |
11838877 |
T |
|
| Q |
373 |
aataggaccgggg-ggtatgcagtatgcatgcttaccgcacttttggatgtgagtggatcatacccggaaccaccggatgcaaagcaaacacccgtgacg |
471 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11838878 |
aataggaccgggggggtatgcagtatgcatgcttaccgcacttttggatgtgagtggatcatacccggaaccactggatgcaaagcaaacacccgtgacg |
11838977 |
T |
|
| Q |
472 |
agatcgctaggttggatatttggatccaaatacgccggcagaaattccttgatgcccaatgcttcaactgatatatcacaccaatagaaaaggaagtaaa |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
11838978 |
agatcgctaggttggatatttggatccaaatacgccggcagaaattccttaatgcccaatgcttcaactgacatatcacaccaatagtaaaggaagtaaa |
11839077 |
T |
|
| Q |
572 |
ttttgattccttttgaattcagatttcctagtccctaccgtctttgtttccacgcattcgatgcatgatcg |
642 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
11839078 |
ttttgattccttttgaattcagatttcctagtccctaccgtatttgttttcacgcattcgatgcatgatcg |
11839148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 11838540 - 11838731
Alignment:
| Q |
16 |
atgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatgaaattttttctaccctctccaacaattccttttagctttcc |
115 |
Q |
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| T |
11838540 |
atgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatgaaattttttctaccctctccaacaattccttttagctttcc |
11838639 |
T |
|
| Q |
116 |
tatgtattctttgaacaaaattatttgaccggacaacgatatagctgactggttaataatatgatacagtgactaagttagaaaggaataag |
207 |
Q |
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| T |
11838640 |
tatgtattctttgaacaaaattatttgaccggacaacgatatagctgactggttaataatatgatacagtgaccaagttagaaaggaataag |
11838731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 273 - 642
Target Start/End: Complemental strand, 53276537 - 53276168
Alignment:
| Q |
273 |
ctattttcggtcctatttataagaaacatttagattaatatatttagatcaaattttaaactagattcagtaacttttgttgatcaacgtatcttttata |
372 |
Q |
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||||||||| |||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||| |
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| T |
53276537 |
ctattttcgatcctatttataataaacatttagattaatgtatctagattaaattttaaactagattcattaatttttgttgatcaacgtgtcttttata |
53276438 |
T |
|
| Q |
373 |
aataggaccggggggtatgcagtatgcatgcttaccgcacttttggatgtgagtggatcatacccggaaccaccggatgcaaagcaaacacccgtgacga |
472 |
Q |
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|||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53276437 |
aataagatcggaaggtatgcaggatgcatgcttaccgcacttttggatgtgagtggatcatacccagaaccaccggatgcaaagcaaacacccgtgacga |
53276338 |
T |
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| Q |
473 |
gatcgctaggttggatatttggatccaaatacgccggcagaaattccttgatgcccaatgcttcaactgatatatcacaccaatagaaaaggaagtaaat |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53276337 |
gatcgctaggttggatatttggatccaaatacgccggcagaaattccttaatgcccaatgcttcaactgatatatcacaccaatagaaaaggaagtaaat |
53276238 |
T |
|
| Q |
573 |
tttgattccttttgaattcagatttcctagtccctaccgtctttgtttccacgcattcgatgcatgatcg |
642 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53276237 |
tttgattccttttgaattcagatttcctagtccctgccgtctttgtttccacgcattcgatgcatgatcg |
53276168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 53276793 - 53276602
Alignment:
| Q |
16 |
atgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatgaaattttttctaccctctccaacaattccttttagctttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53276793 |
atgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatgaaattttttctaccctctccaacaattccttttagctttcc |
53276694 |
T |
|
| Q |
116 |
tatgtattctttgaacaaaattatttgaccggacaacgatatagctgactggttaataatatgatacagtgactaagttagaaaggaataag |
207 |
Q |
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| T |
53276693 |
tatgtattctttgaacaaaattatttgaccggacaacgatatagctgactggttaataatatgatacagtgaccaagttagaaaggaataag |
53276602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 12062607 - 12062568
Alignment:
| Q |
344 |
aacttttgttgatcaacgtatcttttataaataggaccgg |
383 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |
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| T |
12062607 |
aacttttgttgatcaaaatatcttttataaataggaccgg |
12062568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 544
Target Start/End: Complemental strand, 8243140 - 8243023
Alignment:
| Q |
427 |
ggatcatacccggaaccaccggatgcaaagcaaacacccgtgacgagatcgctaggttggatatttggatccaaatacgccggcagaaattccttgatgc |
526 |
Q |
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|||||||| || | |||||||||||||||| ||| || ||| | | || ||||| |||| ||||||||||||||| || || ||| |||| || |||| |
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| T |
8243140 |
ggatcatatcctgcaccaccggatgcaaagttaacgccagtggccaattcactaggctggagatttggatccaaatatgctggtagatattctttaatgc |
8243041 |
T |
|
| Q |
527 |
ccaatgcttcaactgata |
544 |
Q |
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| ||| |||||||||||| |
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| T |
8243040 |
ctaattcttcaactgata |
8243023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 8233076 - 8232988
Alignment:
| Q |
45 |
accacaaggaaaacactgttggctaggatgaaattttttctaccctctccaacaattccttttagctttcctatgtattctttgaacaa |
133 |
Q |
| |
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||||||||||||| ||| || || | |||||| ||| |||| | |||||||||| | || ||| ||||||||||||||||||||||| |
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| T |
8233076 |
accacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaacaagttctcttaattttcctatgtattctttgaacaa |
8232988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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