View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17301_high_2 (Length: 455)
Name: NF17301_high_2
Description: NF17301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17301_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 36323773 - 36324190
Alignment:
| Q |
1 |
tgctatgatcacctttgcctttggatttccactataccggattcatgttgcacaaagaactaatccaattgttgagatactgcaggtatactatattaaa |
100 |
Q |
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| T |
36323773 |
tgctatgatcacctttgcctttggattaccactataccggattcatgttgcacaaagaactaatccaattgttgagatactgcaggtatactatattaaa |
36323872 |
T |
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| Q |
101 |
ctagctagcgtgcagacggccactaacatggtcgtatgtcttttttcgataaaaatattgaaagttaaaaaattaatgggagaat--tggaaacaaattt |
198 |
Q |
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| T |
36323873 |
ctagctagggtgcagacggccactaacatggtcgtatgtcttttctcgataaaaatattgaaagttacaaa-ttaatgggagaatcatggaaacaaattt |
36323971 |
T |
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| Q |
199 |
tcagatatttggaaaataaataaattattagtataaagatagcattgatgaagctgttaattttccaggtatacattgctgcaattcgcaacagaaatct |
298 |
Q |
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| T |
36323972 |
tctgatattcggaaaataaataaattagtagtataaagatagcattgatgaagctgttgattttccaggtatacattgctgcaattcgcaacagaaatct |
36324071 |
T |
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| Q |
299 |
gtcccttcctgcagactcaagagaactatatgaaattgaacaggacaaagaagctataatggaaatagagtatctacctcatagagacatttacaggttt |
398 |
Q |
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| T |
36324072 |
gtcccttcctgctgactctggagaactatatgaaattgaacaggacaaagaagctttaatggaaatagagtatctacctcatagagacatttacaggtgc |
36324171 |
T |
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| Q |
399 |
actctcactactatccaaa |
417 |
Q |
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| T |
36324172 |
actctcgctactatccaaa |
36324190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 258 - 440
Target Start/End: Original strand, 36331124 - 36331306
Alignment:
| Q |
258 |
attttccaggtatacattgctgcaattcgcaacagaaatctgtcccttcctgcagactcaagagaactatatgaaattgaacaggacaaagaagctataa |
357 |
Q |
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| T |
36331124 |
attttccaggtttatattgctgcaattcgcaacagaaatctgccccatcctgcagactctgaagaactatatgaaattgaacatgacaaagaagctgcgg |
36331223 |
T |
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| Q |
358 |
tggaaatagagtatctacctcatagagacatttacaggtttactctcactactatccaaaactaactaaatatctcacttgat |
440 |
Q |
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| T |
36331224 |
tggaaatagagtatctaccacatagagacattttcaggttcacttcaactactatccaaaactaacactatatgtcacttgat |
36331306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36330619 - 36330682
Alignment:
| Q |
1 |
tgctatgatcacctttgcctttggatttccactataccggattcatgttgcacaaagaactaat |
64 |
Q |
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| T |
36330619 |
tgctatgatcatctttgcccttggattgccactatacagaattcatgctgcacaaagaactaat |
36330682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 5459303 - 5459379
Alignment:
| Q |
321 |
gaactatatgaaattgaacaggacaaagaagctataatggaaatagagtatctacctcatagagacatttacaggtt |
397 |
Q |
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| T |
5459303 |
gaactatatgaaattgaacaggacaaggaagcttctgaggaaattgagtttctacctcatagagacattttcaggtt |
5459379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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