View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17301_high_4 (Length: 357)
Name: NF17301_high_4
Description: NF17301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17301_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 31465561 - 31465365
Alignment:
| Q |
20 |
atatgttgtgaaatgtgaagttcaatatctcatgaagtgcctattataaccctttcctctatataatagaaacttgtgagaggttaatgtcatcttttcc |
119 |
Q |
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| T |
31465561 |
atatgttgtgaaatgtgaagttcaatatctcatgaagtgcctattataaccctttcctctatataatagaaacttgtgagaggttaatgttatcttttcc |
31465462 |
T |
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| Q |
120 |
atagtaattcatctacaagaattgttagaggttaagttcttgaaatcctctttgaaataaagtggttaccccttattttagtaagtgttgaaaaata |
216 |
Q |
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| T |
31465461 |
atagtaattcatctacaagaattgttagaggttaagttcttgaaatcctctttgaaataaagtggttcccccttattttagtaagtgtggaaaaata |
31465365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 342
Target Start/End: Complemental strand, 31465358 - 31465259
Alignment:
| Q |
243 |
agtttaatagagaaaatattcaatagttactctannnnnnnaagccattnnnnnnnctctcttttctttagggtgagtgggagctcaaataagaaataat |
342 |
Q |
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| T |
31465358 |
agtttaatagagaaaataatcaatagttactctatttttttaagccattaaaaaaactctcttttctttagggtgagtgggagctcaaataagaaataat |
31465259 |
T |
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