View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17301_high_5 (Length: 319)
Name: NF17301_high_5
Description: NF17301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17301_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 5351781 - 5351499
Alignment:
| Q |
19 |
ctctttggaaaattaatggaaaggaacagatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351781 |
ctctttggaaaattaatggaaaggaacagatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacag |
5351682 |
T |
|
| Q |
119 |
aaataggacagagaggacttaacttgaatggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatga |
218 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351681 |
aaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaactagctagagcagtctacaatgatgctgatgtatatcttcttgatga |
5351582 |
T |
|
| Q |
219 |
cccttttagtgcagtagatgcacatactgctgcaattccatttcatgtaagaacaataacttgaaagacttgatgttttcgta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351581 |
cccttttagtgcagtagatgcacatactgctgcaattctatttcatgtaagaacaataacttgaaagacttgatgttttcgta |
5351499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 15125769 - 15125977
Alignment:
| Q |
46 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
145 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || |||||||| |||| ||||||||| |||||||||||||||||||| ||||||| ||||| ||| |
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|
| T |
15125769 |
agatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtgagagagggattaacatga |
15125868 |
T |
|
| Q |
146 |
atggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatac |
245 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||| ||||| ||||| |
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|
| T |
15125869 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatac |
15125968 |
T |
|
| Q |
246 |
tgctgcaat |
254 |
Q |
| |
|
|||||||| |
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|
| T |
15125969 |
agctgcaat |
15125977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 46 - 254
Target Start/End: Complemental strand, 14949606 - 14949398
Alignment:
| Q |
46 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
145 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || |||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||| ||| |
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|
| T |
14949606 |
agatatgagaaagcaattaaagcttgtgctttagataaggatatcaatgattttagccatggtgatcttacagaaataggtgagagagggattaacatga |
14949507 |
T |
|
| Q |
146 |
atggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatac |
245 |
Q |
| |
|
|||||| ||||||||||| ||||| | ||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||| ||||| ||||| |
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|
| T |
14949506 |
gtggaggacaaaagcaaaggattcagcttgctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatac |
14949407 |
T |
|
| Q |
246 |
tgctgcaat |
254 |
Q |
| |
|
|||||||| |
|
|
| T |
14949406 |
agctgcaat |
14949398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 271
Target Start/End: Complemental strand, 5290443 - 5290218
Alignment:
| Q |
46 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
145 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || || |||||||| ||| ||||||||||||||||||||||||||| || |||||||| ||||| ||| |
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|
| T |
5290443 |
agatatgagaaagcaatcaaagcttgtgccttagataaggatatcaatgattttagccatggtgatcttacagaaatcggtcagagagggattaacatga |
5290344 |
T |
|
| Q |
146 |
atggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatac |
245 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| | ||||| |||||||| ||||| |||||||| ||||| ||||| |
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|
| T |
5290343 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatctccttgatgatcctttcagtgcagttgatgctcatac |
5290244 |
T |
|
| Q |
246 |
tgctgcaattccatttcatgtaagaa |
271 |
Q |
| |
|
|||||||| | ||| ||||||||| |
|
|
| T |
5290243 |
agctgcaatactattcaatgtaagaa |
5290218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 254
Target Start/End: Complemental strand, 5282856 - 5282648
Alignment:
| Q |
46 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
145 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || || |||||||| ||| ||| |||||||||||||||||||||||||| |||||||| | || | | |
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|
| T |
5282856 |
agatatgagaaagcaattaaagcttgtgccttagataaggatatcaatgatttcagccatggtgatcttacagaaataggtcagagagggatcaatataa |
5282757 |
T |
|
| Q |
146 |
atggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatac |
245 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
5282756 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatttatctccttgatgatccttttagtgcagttgatgctcatac |
5282657 |
T |
|
| Q |
246 |
tgctgcaat |
254 |
Q |
| |
|
|||||||| |
|
|
| T |
5282656 |
agctgcaat |
5282648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 5313750 - 5313958
Alignment:
| Q |
48 |
atatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgaat |
147 |
Q |
| |
|
|||||||||||| || |||| |||||| || || |||||||| |||| ||||||| |||| ||||||||||||||||| |||||||| ||||| | | | |
|
|
| T |
5313750 |
atatgagaatgccattaaagtatgtgccttagataaggatattgatgattttagctatggcgatcttacagaaataggtcagagagggattaacgtaagt |
5313849 |
T |
|
| Q |
148 |
ggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatactg |
247 |
Q |
| |
|
||||| || |||||||| |||||| | ||||||||||||||||||||||||||| | ||||| || ||||| ||||| ||||| || |||||||| || | |
|
|
| T |
5313850 |
ggaggacagaagcaaaggattcaaatagctagagcagtctacaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacag |
5313949 |
T |
|
| Q |
248 |
ctgcaattc |
256 |
Q |
| |
|
|||| |||| |
|
|
| T |
5313950 |
ctgctattc |
5313958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 11833226 - 11833434
Alignment:
| Q |
46 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
145 |
Q |
| |
|
||||||||||| ||||| ||||| ||| | || | |||||||| ||| ||||||||||||||||||||||||||| || |||||||| | || | | |
|
|
| T |
11833226 |
agatatgagaaagcaattaaagcttgttccttacataaggatatcaatgattttagccatggtgatcttacagaaattggtcagagagggatcaatataa |
11833325 |
T |
|
| Q |
146 |
atggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatac |
245 |
Q |
| |
|
|||||| ||||||||||| |||||| | |||||||||||||| |||||||| ||| | ||||| |||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
11833326 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctataatgatgcagatatctatctccttgatgatcctttcagtgcagttgatgctcatac |
11833425 |
T |
|
| Q |
246 |
tgctgcaat |
254 |
Q |
| |
|
|| ||||| |
|
|
| T |
11833426 |
agcagcaat |
11833434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 271
Target Start/End: Original strand, 5306552 - 5306765
Alignment:
| Q |
58 |
gcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgaatggagggcaaa |
157 |
Q |
| |
|
||||| ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||||||| || |||||||| | || ||| |||||| |||| |
|
|
| T |
5306552 |
gcaattaaagcttgtgctttagataaggacttcaatgatttcagccatggtgatcttacagaaattggccagagagggatcaatatgagtggaggacaaa |
5306651 |
T |
|
| Q |
158 |
agcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatactgctgcaattcc |
257 |
Q |
| |
|
|||| || |||||| | |||||||||||||||| |||||| ||| | ||||| |||||||| ||||| |||||||| ||||| ||||| |||||||| | |
|
|
| T |
5306652 |
agcagaggattcaactagctagagcagtctacagtgatgcagatatctatctccttgatgatcctttcagtgcagttgatgctcatacagctgcaatact |
5306751 |
T |
|
| Q |
258 |
atttcatgtaagaa |
271 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
5306752 |
attcaatgtaagaa |
5306765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 31526566 - 31526356
Alignment:
| Q |
46 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
145 |
Q |
| |
|
|||||||||||||| || ||||| ||||| |||||| | ||||| ||| ||| || ||||||||||||||||||||||| || ||||| ||||| | | |
|
|
| T |
31526566 |
agatatgagaatgctattaaagcttgtgccttggacgaagatatcaatgatttgagtcatggtgatcttacagaaataggtcaaagagggattaacctaa |
31526467 |
T |
|
| Q |
146 |
atggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatac |
245 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||| ||||||| ||||| ||||||||| | ||||| |||||||||||||| || ||||| || || || || |
|
|
| T |
31526466 |
gtggaggacaaaagcaaaggattcaactagctcgagcagtttacaacgatgctgatatctatctccttgatgaccctttcagcgcagttgacgcgcacac |
31526367 |
T |
|
| Q |
246 |
tgctgcaattc |
256 |
Q |
| |
|
|||||| |||| |
|
|
| T |
31526366 |
tgctgctattc |
31526356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 11739020 - 11738952
Alignment:
| Q |
103 |
catggtgatcttacagaaataggacagagaggacttaacttgaatggagggcaaaagcaaagaattcaa |
171 |
Q |
| |
|
||||||||||| || ||||| ||| |||||||| ||||||||| ||| || ||||||||| |||||||| |
|
|
| T |
11739020 |
catggtgatctcactgaaattggagagagaggagttaacttgagtgggggtcaaaagcaacgaattcaa |
11738952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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