View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17301_low_3 (Length: 363)
Name: NF17301_low_3
Description: NF17301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17301_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 47946052 - 47945706
Alignment:
| Q |
1 |
gaacacctctgatttttggaggataacacaattgctgatccattttgaccatgctttctggctacatggttgctatcatcacccaaattttggaccttta |
100 |
Q |
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| T |
47946052 |
gaacacctctgatttttggaggataacacaattgctgatccattttgaccatgctttctggctacatggttgctatcatcacccaaattttggaccttta |
47945953 |
T |
|
| Q |
101 |
cagcatcttcaaacaactgattcctcacaacatcatgcaaatgagcaataagctgtttcctcaaatcctcaaaagctaaatccaacctctccaacatctc |
200 |
Q |
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| T |
47945952 |
cagcatcttcaaacaactgattcctcacaacatcatgcaaatgagcaataagctgtttcctcaaatcctcaaaagctaaatccaacctctccaacatctc |
47945853 |
T |
|
| Q |
201 |
caaagaattcttattaaacataaaaagtccgtaataaagatcaaaactatccccactagtattctccaccaaattcaacaaagattcataccctttagta |
300 |
Q |
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| T |
47945852 |
caaagaattcttattaaacataaaaagtccgtaataaagatcaaaactatccccactagtattctccaccaaattcaacaaagattcataccctttagta |
47945753 |
T |
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| Q |
301 |
ttaataggagtagattccaacgtcaacatacccaaaaccctaccaac |
347 |
Q |
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| T |
47945752 |
ttaataggagtagattccaacgtcaacatacccaaaaccctaccaac |
47945706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 47947334 - 47947282
Alignment:
| Q |
238 |
agatcaaaactatccccactagtattctccaccaaattcaacaaagattcata |
290 |
Q |
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| T |
47947334 |
agatcaaagctatccccaccagtattctccaccaaacttaataaagtttcata |
47947282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 34487728 - 34487676
Alignment:
| Q |
260 |
tattctccaccaaattcaacaaagattcataccctttagtattaataggagta |
312 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
34487728 |
tattctccaccaaattcaacaaagatttataccctttagtattaatagaagta |
34487676 |
T |
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