View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17301_low_7 (Length: 256)
Name: NF17301_low_7
Description: NF17301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17301_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 52161412 - 52161546
Alignment:
| Q |
122 |
gtaacccacctcttcatttttggaatgaacaacaatattcaattttgtaacatcataagcaacttttcctgttctaagaaaaccaaagctgtaactgttc |
221 |
Q |
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| T |
52161412 |
gtaacccacctcttcatttttggaatgaacaacaatattcaattttgtaacatcataagcaacttttcctgttctaagaaaaccaaagctgtaactgttc |
52161511 |
T |
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| Q |
222 |
ttgaacactacccctctatatctatcaaaagcagc |
256 |
Q |
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| T |
52161512 |
ttgaacactatccctctatatctatcaaaagcagc |
52161546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 52161291 - 52161362
Alignment:
| Q |
1 |
ttttgaaataaacaaattatagctttcatcaactccaagttgaagctgcaacacaaaccaatttcctaatct |
72 |
Q |
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| T |
52161291 |
ttttgaaataaacaaattatagctttcatccactccaagttgaagctgcaacacaaaccaatttcctaatct |
52161362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 3226491 - 3226553
Alignment:
| Q |
2 |
tttgaaataaacaaattatagctttcatcaactccaagttgaagctgcaacacaaaccaattt |
64 |
Q |
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| T |
3226491 |
tttgaaacaaacaaattatagctttcatccacttcaaggtgaagctgcaacacaaatcaattt |
3226553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 3226611 - 3226669
Alignment:
| Q |
122 |
gtaacccacctcttcatttttggaatgaacaacaatattcaattttgtaacatcataag |
180 |
Q |
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| T |
3226611 |
gtaactcacctcttcacttttagaatgaacaaaaatattcaattttgtaacatcataag |
3226669 |
T |
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