View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17302_high_11 (Length: 427)
Name: NF17302_high_11
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 29578095 - 29577684
Alignment:
| Q |
1 |
ggaaagctaagatatcattgccttcattaaattatttggttgtggcctaaacgcaaactatagcttataataagggttatgacatataatataagagaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29578095 |
ggaaagctaagatatcattgccttcattaaattatttggttgtggcctaaacgcaaactatagcttataataagggttatgacatataatataagagaat |
29577996 |
T |
|
| Q |
101 |
atttaaagtgaagattacaagcatagtaaggtataacgtgtcaataaatggttggttagatgagatatatattaacttgtgaggttggactttacttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29577995 |
atttaaagtgaagattacaagcatagtaaggtataacgtgtcaataaatggttggttagatgagatatatattaacttgtgaggttggactttacttgtt |
29577896 |
T |
|
| Q |
201 |
tggtggaagatttatttctctttcgccaacactttagaagttttgctttcttaagactttatcttgaacaaaaataatcaaacctccttaattaacttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29577895 |
tggtggaagatttatttctctttcgccaacactttagaag--ttgctttcttaagactttatcttgcacaaaaataatcaaacctccttaattaacttga |
29577798 |
T |
|
| Q |
301 |
tatatttgttatttttaatgaaaaatgtgactaatccttatgttccttcattcaaaccaccatatcatcttattaacttgatgtattgttcaaagagcaa |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29577797 |
tgtatttgttatttttaatgaaaaatgtgactaatccttatgttccttcattcaaaccaccatatcatcttattaacttgatgtattgttcaaagagcaa |
29577698 |
T |
|
| Q |
401 |
aagtgataaacatg |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29577697 |
aagtgataaacatg |
29577684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University