View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17302_high_12 (Length: 426)
Name: NF17302_high_12
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 10195151 - 10195549
Alignment:
| Q |
13 |
aatatgccggaagattgaaaatatgtttgggatgatatggaattggaaaatgaccaaaagaaattaacgaacacatgaatgttcttgtgttaatattgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10195151 |
aatatgccggaagattgaaaatatgtttgggatgatatggaattggaaaatgaccaaaagaaattaacgagcacgtgaatgttcttgtgttaatattgtt |
10195250 |
T |
|
| Q |
113 |
catccatgttcatactagaaacttgaaacccttgatacaaggtgcaagacataaacatactaaagagatgtttatgttgctgaaatttaataattatagt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
10195251 |
catccatgttcatactagaaacatgaaacccttgatacaaggtgcaagacataaacatactaaagagatgtttatgttgctaaaatttaataattataat |
10195350 |
T |
|
| Q |
213 |
gataattgtggtttttaaaagataaattagctttcatgattgatcataagtcttattcataatcatagcatccccagtcacatggtgatagtgaccaggg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10195351 |
gataattgtggtttttaaaagataaattagctttcatgattgatcataagtcttattcataatcatagcatccccagtcacatggtgatagtgaccgggg |
10195450 |
T |
|
| Q |
313 |
tgtaatcaacaatgactgagaatttataataactgttaccaaattctttcaaggcatggataccagagcagtaaattgaatattttcatagtagtaaat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10195451 |
tgtaatcaacaatgactgagaatttataataactgttaccaaattctttcaaggcatggataccagagcagtaaatttaatattttcatagtagtaaat |
10195549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University