View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_high_18 (Length: 365)
Name: NF17302_high_18
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 3917024 - 3916662
Alignment:
| Q |
1 |
ctaccaattttcagcacatataacttccttttcctgctgacaggcacatttagcatatggaattccccaaagctctctaaggaggttggccttgtttcac |
100 |
Q |
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| T |
3917024 |
ctaccaattttcagcacatataacttccttttcctgctgacaggcacatttagcatatggaattccccaaagctctctaaggaggttggccttgtttcac |
3916925 |
T |
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| Q |
101 |
aaggtagtatttctttatttgatgaagatatcatctaatacattgatgttattgaaacttaagaagggttatttacatactttctccaaagtgttcttga |
200 |
Q |
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| T |
3916924 |
aaggtagtatttctttatttgatgaagatatcatctaatacattgatgttattgaaacttaagaagggttatttacatactttctccaaagtgttcttga |
3916825 |
T |
|
| Q |
201 |
caagctttactgtgacaaaaagtctaggagcataaccaagtaacttgtttatttctcgttggtatttaatttttcaattagtcggattataaagaaattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3916824 |
caagctttactgtgacaaaaagtctaggagcataaccaagtaacttgtttatttctcgttggtatttcatttttcaattagtcggattataaagaaattg |
3916725 |
T |
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| Q |
301 |
ctgcatttacaaggaacaacaactaaaatcttccttcgttccgagataatattcttcgacatg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
3916724 |
ctgcatttacaaggaacaacaactaaaatcttccttcgttccgagataactttctttgacatg |
3916662 |
T |
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