View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_high_21 (Length: 355)
Name: NF17302_high_21
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 55634374 - 55634705
Alignment:
| Q |
11 |
cacagacttcacacgcaacagccccacacccaaacctatttaatctcagcttcactctcaaagtcccttccttagttcatttctaattcgtagagtaggg |
110 |
Q |
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| T |
55634374 |
cacagacttcacacgcaacagccccacacccaaacctatttaatctcagcttcactctcagagtcccttccttagttcatttctaattcgtagagtaggg |
55634473 |
T |
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| Q |
111 |
ttttgtattttcaattccgaaataatcatcgttttcaacctcaatcgtagttctctactcctcttcactcttcctccattgtcgagnnnnnnnngtaacc |
210 |
Q |
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| T |
55634474 |
ttttgtattttcaattccgaaataatcatcgttttcaacctcaacggtagttctctactcctcttcactattcctccattgtcgagaaaaaaaagtaacc |
55634573 |
T |
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| Q |
211 |
atcgaacaccgttactctg----tggttccatcgtgtttccgcgataacgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaat |
306 |
Q |
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||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55634574 |
atcaatcaccgttactctgtggttggttccatcgtgtttccgcgatcacgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaat |
55634673 |
T |
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| Q |
307 |
ggttgctactgtctggtccgatgataacaacc |
338 |
Q |
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||||||||| |||||||||||||||||||||| |
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| T |
55634674 |
ggttgctacggtctggtccgatgataacaacc |
55634705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 16437344 - 16437675
Alignment:
| Q |
11 |
cacagacttcacacgcaacagccccacacccaaacctatttaatctcagcttcactctcaaagtcccttccttagttcatttctaattcgtagagtaggg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16437344 |
cacagacttcacacgcaacagccccacacccaaacctatttaatctcagcttcactctcagagtcccttccttagttcatttctaattcgtagagtaggg |
16437443 |
T |
|
| Q |
111 |
ttttgtattttcaattccgaaataatcatcgttttcaacctcaatcgtagttctctactcctcttcactcttcctccattgtcgagnnnnnnnngtaacc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
16437444 |
ttttgtattttcaattccgaaataatcatcgttttcaacctcaacggtagttctctactcctcttcactattcctccattgtcgagaaaaaaaagtaacc |
16437543 |
T |
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| Q |
211 |
atcgaacaccgttactctg----tggttccatcgtgtttccgcgataacgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaat |
306 |
Q |
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||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16437544 |
atcaatcaccgttactctgtggttggttccatcgtgtttccgcgatcacgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaat |
16437643 |
T |
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| Q |
307 |
ggttgctactgtctggtccgatgataacaacc |
338 |
Q |
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||||||||| |||||||||||||||||||||| |
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| T |
16437644 |
ggttgctacggtctggtccgatgataacaacc |
16437675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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