View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_high_25 (Length: 334)
Name: NF17302_high_25
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 47625762 - 47626072
Alignment:
| Q |
1 |
gttttctttccaagttgttttgttaggtttgaaacttatccgttttatcagcattcagagacctcagcagcagcagcaacaactaagggttagtttattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47625762 |
gttttctttccaagttgttttgttaggtttgaaacttatccgttttatcagcattcagagacctcagcagcagcaacaacaactaagggttagtttattt |
47625861 |
T |
|
| Q |
101 |
atatgatgtttctattaatccataattagcatctttgaccctagtaagcgcgccaaaatatctttatggcttagactctttgagcctgccataagattaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625862 |
atatgatgattctattaatccataattagcatctttgaccctagtaagcgcgccaaaatatctttatggcttagactctttgagcctgccataagattaa |
47625961 |
T |
|
| Q |
201 |
tcctcggatcgaacatccaaacttttttcacgtggaattgcgatacctatcaaatcggctattatagtaatctaatttagtcatgctatcaattttacca |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625962 |
tcctcggatcgaacatccaaacttttttctcgtggaattgcgatacctatcaaatcggctattatagtaatctaatttagtcatgctatcaattttacca |
47626061 |
T |
|
| Q |
301 |
aggttataagt |
311 |
Q |
| |
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||||||||||| |
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| T |
47626062 |
aggttataagt |
47626072 |
T |
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