View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17302_high_32 (Length: 309)

Name: NF17302_high_32
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17302_high_32
NF17302_high_32
[»] chr5 (6 HSPs)
chr5 (6-293)||(36477675-36477962)
chr5 (61-116)||(73650-73705)
chr5 (61-115)||(11824582-11824636)
chr5 (61-116)||(11691015-11691070)
chr5 (61-116)||(29948023-29948078)
chr5 (71-116)||(6688936-6688981)
[»] chr6 (4 HSPs)
chr6 (61-116)||(12143675-12143730)
chr6 (61-109)||(34837113-34837161)
chr6 (61-116)||(180477-180532)
chr6 (61-116)||(1856887-1856942)
[»] chr3 (6 HSPs)
chr3 (61-115)||(36659321-36659375)
chr3 (61-116)||(45261498-45261553)
chr3 (64-117)||(35455444-35455497)
chr3 (61-116)||(17003533-17003588)
chr3 (61-116)||(40344888-40344943)
chr3 (61-117)||(28695683-28695739)
[»] chr4 (4 HSPs)
chr4 (61-116)||(47231529-47231584)
chr4 (61-114)||(44720540-44720593)
chr4 (61-116)||(31707308-31707363)
chr4 (68-116)||(18838896-18838944)
[»] chr2 (12 HSPs)
chr2 (61-116)||(38496610-38496665)
chr2 (61-116)||(2761650-2761705)
chr2 (61-116)||(3268935-3268990)
chr2 (61-116)||(3269494-3269549)
chr2 (61-116)||(3270053-3270108)
chr2 (61-116)||(21229620-21229675)
chr2 (61-116)||(38214250-38214305)
chr2 (65-116)||(40664376-40664427)
chr2 (61-115)||(40504012-40504066)
chr2 (61-116)||(21794974-21795029)
chr2 (65-116)||(28239236-28239287)
chr2 (61-115)||(40442855-40442909)
[»] chr1 (7 HSPs)
chr1 (61-116)||(31003541-31003595)
chr1 (61-116)||(11435683-11435738)
chr1 (61-116)||(31181008-31181062)
chr1 (61-116)||(42745680-42745735)
chr1 (61-115)||(31152570-31152624)
chr1 (63-116)||(28470067-28470120)
chr1 (64-116)||(2619642-2619694)
[»] chr7 (5 HSPs)
chr7 (61-115)||(34470195-34470249)
chr7 (61-106)||(508607-508652)
chr7 (69-116)||(40016934-40016981)
chr7 (71-116)||(12485423-12485468)
chr7 (71-116)||(12506855-12506900)
[»] scaffold0024 (1 HSPs)
scaffold0024 (61-116)||(154477-154532)
[»] chr8 (4 HSPs)
chr8 (61-116)||(1445490-1445545)
chr8 (61-116)||(16890224-16890279)
chr8 (61-107)||(2520098-2520144)
chr8 (61-115)||(14976351-14976405)
[»] scaffold0088 (1 HSPs)
scaffold0088 (61-101)||(51410-51450)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 36477962 - 36477675
Alignment:
Q  6 aaggacgataagaatacccatactacctcaaattaaagaccaataacatcttttctaaaaatattcaaaaagttacgttaattaatgattgcattgattt 105  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||    
T  36477962 aaggacgataagaatactcataccacctcaaattaaagaccaataacatcttttttaaaaatattcaaaaagttacattaattaatgattgcattgaatt 36477863  T
Q  106 tgatgttttttatatannnnnnnnnatgataaaaaccggagagagtactctcttgccaattcttttatttagttgggatctatgtatctccatgagatga 205  Q
    |||||||||||  |||         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36477862 tgatgttttttcaatatttttttttatgataaaaatcggagagagtactctcttgccaattcttttatttagttgggatctatgtatctccatgagatga 36477763  T
Q  206 gatagcagttatgaaccaccagtggtatgctttcaatagtttctcgctttcagccaattgcagatataactctacttcactttcatag 293  Q
    ||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||  |||||||||||||||||    
T  36477762 gatagcagttatgaaccaccagtagtattctttcaatagtttgtcgctttcagccaattgcaaatataatcctacttcactttcatag 36477675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 73650 - 73705
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||| ||||||||||  ||||||||||||||| ||||||||||| |||||    
T  73650 taaaaatattaaaaaagttacactaattaatgattgcactgattttgatggttttt 73705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 11824582 - 11824636
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgttttt 115  Q
    |||||||||| |||||||||  | |||||||||||| ||||||||||||||||||    
T  11824582 taaaaatatttaaaaagttaaatcaattaatgattgtattgattttgatgttttt 11824636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 11691070 - 11691015
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||  | ||||||| |||||||| |||||||| ||||||    
T  11691070 taaaaatattcaaaaagttaaatcaattaataattgcattaattttgatatttttt 11691015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 29948078 - 29948023
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||  |||||||||| |||| |||||||||||||| ||||||| ||||||    
T  29948078 taaaaatatcaaaaaagttacattaaataatgattgcattggttttgatatttttt 29948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 6688936 - 6688981
Alignment:
Q  71 caaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||  |||||||||||||||||| |||| |||||||||    
T  6688936 caaaaagttacactaattaatgattgcattggttttaatgtttttt 6688981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 12143730 - 12143675
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||    
T  12143730 taaaaatattcaaaaagttacattaattaatgattgcattggttttgatatttttt 12143675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 34837161 - 34837113
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgat 109  Q
    |||||||||||||||||||||  |||||||||| || ||||||||||||    
T  34837161 taaaaatattcaaaaagttacactaattaatgagtgtattgattttgat 34837113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 180477 - 180532
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||| ||||||||||||||||  |||||||||| || |||| ||||||||||||||    
T  180477 taaacatattcaaaaagttacactaattaatgagtgtattggttttgatgtttttt 180532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 1856887 - 1856942
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||| ||||| |||| ||||||||||||| | ||||||||||| ||||||    
T  1856887 taaaaatatttaaaaaattacattaattaatgatttcgttgattttgatatttttt 1856942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 36659321 - 36659375
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgttttt 115  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  36659321 taaaaatattcaaaaagttacattaattaacgattgtattgattttgatgttttt 36659375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 45261498 - 45261553
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||| ||||||||||||| ||||| ||||| ||||||| ||||||||||||||    
T  45261498 taaaaatgttcaaaaagttacattaatcaatgaatgcattggttttgatgtttttt 45261553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 35455444 - 35455497
Alignment:
Q  64 aaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttta 117  Q
    |||||||||||||||||| ||||| ||| | ||||||| |||||||||||||||    
T  35455444 aaatattcaaaaagttactttaatcaataaatgcattggttttgatgtttttta 35455497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 17003588 - 17003533
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||| ||||| ||||| ||||||  | ||||||||||||    
T  17003588 taaaaatattcaaaaagttacattaatcaatgaatgcattagtattgatgtttttt 17003533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 40344943 - 40344888
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||| |  |||| ||||| ||||||| ||||||||||||||    
T  40344943 taaaaatattcaaaaagttgcaataatcaatgactgcattggttttgatgtttttt 40344888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 28695683 - 28695739
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttta 117  Q
    |||||||||||||||||||||  ||||||||||||  |||| ||| |||| ||||||    
T  28695683 taaaaatattcaaaaagttacactaattaatgattatattggtttagatgattttta 28695739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 47231584 - 47231529
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||||    
T  47231584 taaaaatattcaaaaagttacattaattaatgattccattggttttcatgtttttt 47231529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 44720593 - 44720540
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttt 114  Q
    ||||||||||||||| ||||| ||||| |||||||| |||||||||||| ||||    
T  44720593 taaaaatattcaaaatgttacattaatcaatgattgtattgattttgatatttt 44720540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 31707363 - 31707308
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||||||||||||  |||||||||| || |||| ||||| ||||||||    
T  31707363 taaaaatattcaaaaagttacactaattaatgagtgtattggttttgttgtttttt 31707308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 18838896 - 18838944
Alignment:
Q  68 attcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||| |||  ||||||||||||| ||||| ||||||||||||||    
T  18838896 attcaaaaatttatattaattaatgattacattggttttgatgtttttt 18838944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 38496610 - 38496665
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||    
T  38496610 taaaaatattcaaaaagttacactaattaatgatagcattggttttgatgtttttt 38496665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 2761650 - 2761705
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||||||||||||  |||||||||||||||| | |||| |||||||||    
T  2761650 taaaaatattcaaaaagttacactaattaatgattgcatcggttttaatgtttttt 2761705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 3268935 - 3268990
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||   ||||||||  |||||||||||||||||||||||    
T  3268935 taaaaatattcaaaaagttatactaattaatagttgcattgattttgatgtttttt 3268990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 3269494 - 3269549
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||   ||||||||  |||||||||||||||||||||||    
T  3269494 taaaaatattcaaaaagttatactaattaatagttgcattgattttgatgtttttt 3269549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 3270053 - 3270108
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||   ||||||||  |||||||||||||||||||||||    
T  3270053 taaaaatattcaaaaagttatactaattaatagttgcattgattttgatgtttttt 3270108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 21229620 - 21229675
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||||||||||||  |||||||||||||||||| |||| ||| |||||    
T  21229620 taaaaatattcaaaaagttacaataattaatgattgcattggttttaatgattttt 21229675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 38214250 - 38214305
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||| | ||||| |||||||| |||| ||||||||||||||    
T  38214250 taaaaatattcaaaaagtttctttaatcaatgattgtattggttttgatgtttttt 38214305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 40664376 - 40664427
Alignment:
Q  65 aatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||| | |||||||||||||| |||| ||||||||||||||    
T  40664376 aatattcaaaaagtttctttaattaatgattgtattggttttgatgtttttt 40664427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 40504012 - 40504066
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgttttt 115  Q
    |||||||||||||||  ||||  |||||||||||| |||||||||||||||||||    
T  40504012 taaaaatattcaaaagattacactaattaatgattacattgattttgatgttttt 40504066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 21794974 - 21795029
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||| | ||||| |||||||  |||| ||||||||||||||    
T  21794974 taaaaatattcaaaaagtttctttaatcaatgattatattggttttgatgtttttt 21795029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 28239236 - 28239287
Alignment:
Q  65 aatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||| |||   |||||||||||| ||||||||||||||||||||    
T  28239236 aatattcaaaaaattaaaataattaatgattacattgattttgatgtttttt 28239287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 40442855 - 40442909
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgttttt 115  Q
    |||||||||||||||  |||   |||||||||||| |||||||||||||||||||    
T  40442855 taaaaatattcaaaagattatactaattaatgattacattgattttgatgttttt 40442909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 31003595 - 31003541
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||    
T  31003595 taaaaatattcaaaaagttacatga-ttaatgattgcattggttttgatgtttttt 31003541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 11435683 - 11435738
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||| |||||||||||  ||  |||||||||||||| ||||||||||||||    
T  11435683 taaaaatatgcaaaaagttacactatataatgattgcattggttttgatgtttttt 11435738  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 31181062 - 31181008
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||  | | ||||||||||||||| ||||||||||||||    
T  31181062 taaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgtttttt 31181008  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 42745680 - 42745735
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||| || |||||||||||  |||||||||| |||||| ||||||||||||||    
T  42745680 taaaaatgtttaaaaagttacgacaattaatgatagcattggttttgatgtttttt 42745735  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 31152570 - 31152624
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgttttt 115  Q
    ||||||||||||||||||||| | ||||| | ||||||||| ||||||| |||||    
T  31152570 taaaaatattcaaaaagttacatgaattattaattgcattggttttgatattttt 31152624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 28470067 - 28470120
Alignment:
Q  63 aaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||| | ||||| ||||| ||||||| ||||||| ||||||    
T  28470067 aaaatattcaaaaagttgcattaatcaatgaatgcattggttttgatatttttt 28470120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 2619694 - 2619642
Alignment:
Q  64 aaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||||||||  |||| ||||||||| |||| |||| |||||||||    
T  2619694 aaatattcaaaaagttattttaactaatgattgtattgcttttaatgtttttt 2619642  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 34470195 - 34470249
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgttttt 115  Q
    |||||||||||||||||||   |||||||||||||| |||||||||||| |||||    
T  34470195 taaaaatattcaaaaagtttaattaattaatgattgtattgattttgatattttt 34470249  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 508607 - 508652
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgatttt 106  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||    
T  508607 taaaaatattcaaaaagttacaataattaatcattgcattgatttt 508652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 40016981 - 40016934
Alignment:
Q  69 ttcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||||  ||||||||||||||||||||||  |||||||||    
T  40016981 ttcaaaaagttacagtaattaatgattgcattgatttgtatgtttttt 40016934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 12485423 - 12485468
Alignment:
Q  71 caaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||  |||||||||||||||||| |||| |||||||||    
T  12485423 caaaaagttacactaattaatgattgcattggttttaatgtttttt 12485468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 12506855 - 12506900
Alignment:
Q  71 caaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    |||||||||||  |||||||||||||||||| |||| |||||||||    
T  12506855 caaaaagttacactaattaatgattgcattggttttaatgtttttt 12506900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 154477 - 154532
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||| |||||||  |||||||||| || |||| ||||||||||||||    
T  154477 taaaaatattcaacaagttacactaattaatgagtgtattggttttgatgtttttt 154532  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 1445490 - 1445545
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||| |||||||||| |||| ||||| ||||| |||||||||||||||| |||||    
T  1445490 taaaagtattcaaaaaattacattaatcaatgaatgcattgattttgatgattttt 1445545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 16890279 - 16890224
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgtttttt 116  Q
    ||||||||||||||||||||| ||||||| | || |||||  ||||||||||||||    
T  16890279 taaaaatattcaaaaagttacattaattattaatggcattagttttgatgtttttt 16890224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 2520144 - 2520098
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttg 107  Q
    ||||||||||||||||||||| ||||||||||| || |||| |||||    
T  2520144 taaaaatattcaaaaagttacattaattaatgaatgtattggttttg 2520098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 14976405 - 14976351
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattgattttgatgttttt 115  Q
    ||||||| || | |||||| || |||||||||||| |||||||||||||||||||    
T  14976405 taaaaatgtttagaaagttgcgataattaatgattacattgattttgatgttttt 14976351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 51410 - 51450
Alignment:
Q  61 taaaaatattcaaaaagttacgttaattaatgattgcattg 101  Q
    ||||||||||||||| ||||| |||||||||||||| ||||    
T  51410 taaaaatattcaaaatgttacattaattaatgattgtattg 51450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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