View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_high_47 (Length: 245)
Name: NF17302_high_47
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 31085435 - 31085205
Alignment:
| Q |
1 |
tgctaataa-taacacctttcagtactagttttgatagaagcatgatatattacatatatatgccagttatgtgagagaaagaaataaatacagggtgat |
99 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31085435 |
tgctaataagtaacacctgtcagtactagttttgatagaagcatgatatattacatatatatgccagttatgagagagaaagaaataaatacagggtgat |
31085336 |
T |
|
| Q |
100 |
attatataatgaactacaaattgtttactactcggctatgataattaacagactagtacgggcatgaaaatttacatatatataccgtacaacagaccat |
199 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31085335 |
attatataatgaacaacaaattgtttaccactcggctatgataattaacagactagtacgggcatgaaaatttacatatatataccgtacaacagaccat |
31085236 |
T |
|
| Q |
200 |
ttaatgcatcttttcaacctatgcatatcat |
230 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
31085235 |
ttaatgtatcttttcaacctatgcatatcat |
31085205 |
T |
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