View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_high_6 (Length: 596)
Name: NF17302_high_6
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 53635955 - 53636174
Alignment:
| Q |
1 |
caactatcaagtggccctttgttttttgcttttcttcctttctccccatcttgtatgattttggtggaatatatatataagctgattcnnnnnnnnn--- |
97 |
Q |
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| T |
53635955 |
caactatcaagtggccctttgttttttgcttttcctcctttctccccatcttgtatgattttggtggaatatatata--agctgattaaaaaataaaaaa |
53636052 |
T |
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| Q |
98 |
---gtgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgactaagaaggagtatgacatatactaatactactattgaagttac |
194 |
Q |
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| T |
53636053 |
aaagtgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgactaagaaggagcatgacatatactaatactactattgaagttac |
53636152 |
T |
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| Q |
195 |
atgaattctaattactgtactc |
216 |
Q |
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| T |
53636153 |
atgaattctaattactgtactc |
53636174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 406 - 560
Target Start/End: Original strand, 53636375 - 53636530
Alignment:
| Q |
406 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgtannnnnnnnnnnnnnnnnnctccctaacaattaacattgaat |
505 |
Q |
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| T |
53636375 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgtatttttcttttctttttttctccctaacaattaacattgaat |
53636474 |
T |
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| Q |
506 |
gaaatgcacaaaatgtgatttactc-aaaaataggatgttgtctttgaatttaggc |
560 |
Q |
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| T |
53636475 |
gaaatgcacaaaatgtgatttactcaaaaaataggatgttgtctttgaatttaggc |
53636530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 53636222 - 53636266
Alignment:
| Q |
265 |
tggttaatacaggtgaaggtatatctttcaactctcttgcaagcc |
309 |
Q |
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| T |
53636222 |
tggttaatacaggtgaaggtatatctttcaactctcttgcaagcc |
53636266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 48336481 - 48336427
Alignment:
| Q |
98 |
gtgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgact |
152 |
Q |
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| T |
48336481 |
gtgaacatggttatttcatgcatcaagaaatgaatgttctattttcatgttgact |
48336427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 569
Target Start/End: Complemental strand, 48333670 - 48333602
Alignment:
| Q |
499 |
attgaatgaaatgcacaaaatgtgatttactcaaaaataggatgttgtctttgaatttaggcaaagtcttt |
569 |
Q |
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| T |
48333670 |
attgaatgaaatgcacaaaatgtggtttactc--aattaggatgatgtccttggatttaggcaaagtcttt |
48333602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 48335497 - 48335440
Alignment:
| Q |
406 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgta |
464 |
Q |
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| T |
48335497 |
atgtgacactgaaattagta-ataaagcgtcacatcatagtataaggcccatttatgta |
48335440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 48335626 - 48335569
Alignment:
| Q |
406 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgta |
464 |
Q |
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| T |
48335626 |
atgtgacactgaaattagta-ataaagcgtcacatcatagtataaggcccatttatgta |
48335569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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