View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_16 (Length: 411)
Name: NF17302_low_16
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_16 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 134 - 395
Target Start/End: Original strand, 4950924 - 4951186
Alignment:
| Q |
134 |
tatttaaaacctggtatattgtgatttcaagcgacacctgcaccacttgatgatattatcaagttttttatgaatgaaagatgggg-gtatgcagagaag |
232 |
Q |
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| T |
4950924 |
tatttacaaccttgtatattgtgatttcaagcgacacctgcaccacttgatgatattatcaagttttttatgaatgaaagatggggggtatgcagagaag |
4951023 |
T |
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| Q |
233 |
accataaaaaacctcgtccacaatgtttatagtggatacccttttgattcattatatgttttgctacttgaggtatccactatcactatcaccagaacct |
332 |
Q |
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| T |
4951024 |
accataaaaaacctcgtccacaatgtttttagtggatacccttttgattcattatatgttttgctacttgaggtatccactatcactatcaccagaacct |
4951123 |
T |
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| Q |
333 |
ccaccatcatttgtcctattggccctgtagtagttactctgttcaacaatggacacccttttg |
395 |
Q |
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| T |
4951124 |
ccaccatcatttgtcatattggccctgtagtagttactcttttcaacaatggacacccttttg |
4951186 |
T |
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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 254 - 394
Target Start/End: Complemental strand, 10484846 - 10484719
Alignment:
| Q |
254 |
aatgtttatagtggatacccttttgattcattatatgttttgctacttgaggtatccactatcactatcaccagaacctccaccatcatttgtcctattg |
353 |
Q |
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| T |
10484846 |
aatgtttttagtggatactcttttgatt----atatgttttgctacttgaggtatccactatcac------cagaacctccaccatcatttgtcctattg |
10484757 |
T |
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| Q |
354 |
gccctgtagtagttactctgttcaacaatggacaccctttt |
394 |
Q |
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| T |
10484756 |
accct---gtagttactatgttcaacaatggacaccctttt |
10484719 |
T |
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Target: scaffold0010 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 223878 - 223756
Alignment:
| Q |
203 |
atgaatgaaagatgggggtatgcagagaagaccat-----------aaaaaacctcgtccacaatgtttatagtggatacccttttgattcattatatgt |
291 |
Q |
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| T |
223878 |
atgaatgaaagatgggggtatgcagagaagaccatgatggcctcataaaaaacctcgtccacaatgtttttagtggatacacttttgattg----tatgt |
223783 |
T |
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| Q |
292 |
tttgctacttgaggtatccactatcac |
318 |
Q |
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| T |
223782 |
tttgctacttgaggtatccactatcac |
223756 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 56474813 - 56474843
Alignment:
| Q |
111 |
tgattgttcaaatatcatttctctatttaaa |
141 |
Q |
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| T |
56474813 |
tgattgttcaaatatcatttctctatttaaa |
56474843 |
T |
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