View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_18 (Length: 393)
Name: NF17302_low_18
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 1481230 - 1481593
Alignment:
| Q |
12 |
tattctcaatgcgatgccgagtttcgaagttattaataaaattctaatttatgaactaataaattctatattactttgatataagtttgattgagtgaac |
111 |
Q |
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| T |
1481230 |
tattctcaatgcgatgccgagtttcgaagatattaataaaattctaatttatgaactaataaattctatattactttgatataagtttgattgagtgaac |
1481329 |
T |
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| Q |
112 |
ttatcctatattattttaatttaaaagtatctttagaaatgttaaacatgtattagcaaaaatagaaaagaaatggtaatcatgtaactatatcatctat |
211 |
Q |
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| T |
1481330 |
ttatcctatattattttaatttaaaagtatctttagaaatgttaaacatgtattagcaaaaaaagaaaagaaatggtaatcatgtaacaatatcatctat |
1481429 |
T |
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| Q |
212 |
tctttttgtttttaaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcg |
311 |
Q |
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| T |
1481430 |
tctttttgtttttaaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcg |
1481529 |
T |
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| Q |
312 |
tcgcacgggtcaaatcttagtaattgattggtttatagcacaagggtttcaaatgaattaggag |
375 |
Q |
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| T |
1481530 |
tcgcacgggtcaaatcttagtaattgattggtttatagcacaagggtttcaaatgaattaggag |
1481593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 1850638 - 1850550
Alignment:
| Q |
209 |
tattctttttgtttttaaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgatttt |
297 |
Q |
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| T |
1850638 |
tattcttttttattttaaatgttgttgaatgcatattaagataattttaataataatattgtatacttattaagtttgtttgtgatttt |
1850550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 49190892 - 49190923
Alignment:
| Q |
344 |
ttatagcacaagggtttcaaatgaattaggag |
375 |
Q |
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| T |
49190892 |
ttatagcacaagggtttcaaatgaattaggag |
49190923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 7314516 - 7314550
Alignment:
| Q |
79 |
atattactttgatataagtttgattgagtgaactt |
113 |
Q |
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| T |
7314516 |
atattacttttatataagtttgattgagtgaactt |
7314550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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