View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_22 (Length: 357)
Name: NF17302_low_22
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 167 - 352
Target Start/End: Original strand, 53700930 - 53701115
Alignment:
| Q |
167 |
ccaattacggaacatgcaaaaactccattaaacatgattaatcatatcaaacgttctgatcttaagatgtgtctgttgttggtgtttccacactttctgt |
266 |
Q |
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| T |
53700930 |
ccaatcacggaacatgcaaaaactccattaaacatgattaatcatatcaaacgttcttatcttaagatgtgtctgttgttggtgtttccacactttctgt |
53701029 |
T |
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| Q |
267 |
tcttcttacatgattttcaccaccaccgcttccttgtttcacggttgattcttcatcattcatattttccatcgatctctgctcct |
352 |
Q |
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| T |
53701030 |
tcttcttacatgattttcaccaccaccccctccttgtttcacggttgattcttcatcattcatattttctatcgatttctggtcct |
53701115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 53700790 - 53700875
Alignment:
| Q |
17 |
aatttacattcccgaaatatcaatgtacagttgtactttgtagatattgaagaaaattacacatgtcccataaaaagaagagaagg |
102 |
Q |
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| T |
53700790 |
aatttacattcccgaaatatcaatgtacagttgtactttgtagatattgaagaaaattacacatgtcccataaaaagaagagaagg |
53700875 |
T |
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