View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_28 (Length: 332)
Name: NF17302_low_28
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 4656824 - 4656629
Alignment:
| Q |
9 |
gaataatatctcatcaagatgtacatttccaaataagaaagtgaccatgtcatctaagtgtatggctattttaattttgcctaatactttgaatgtatat |
108 |
Q |
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| T |
4656824 |
gaataacatctcatcaagatgtacacatccaaataagaaagtgaccatgtcatctaagtgtatggctattttaattttgcctaatactttgaatgtatat |
4656725 |
T |
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| Q |
109 |
ctattgttagtctcaaccatct-at-------tattattgatagtgtgggtgtttgtggagcgataattttatgggaattgttatgatgaatgagtaa |
198 |
Q |
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| T |
4656724 |
cttttgttagtctcaattatttgatcaccatctattattgata--gtgggtgtgtgtggagcgataattttatgggaattgttatgatgaatgagtaa |
4656629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 4656570 - 4656524
Alignment:
| Q |
237 |
tgttaagactacacacgtttaatttcatcaccagtggaatatagtttctat |
287 |
Q |
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| T |
4656570 |
tgttaagattacacacgttt----tcatcaccagtggaatatagtttctat |
4656524 |
T |
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