View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17302_low_29 (Length: 324)

Name: NF17302_low_29
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17302_low_29
NF17302_low_29
[»] chr2 (6 HSPs)
chr2 (7-307)||(36098515-36098813)
chr2 (74-294)||(18579636-18579857)
chr2 (74-294)||(15745675-15745896)
chr2 (74-171)||(5848912-5849009)
chr2 (74-300)||(33171009-33171234)
chr2 (229-296)||(30355416-30355483)
[»] chr3 (5 HSPs)
chr3 (74-294)||(52585744-52585965)
chr3 (74-276)||(20685184-20685387)
chr3 (74-294)||(53581064-53581286)
chr3 (120-286)||(39453185-39453351)
chr3 (144-294)||(4136240-4136391)
[»] chr7 (6 HSPs)
chr7 (74-294)||(22910952-22911173)
chr7 (74-294)||(23040174-23040395)
chr7 (19-293)||(48859167-48859441)
chr7 (74-290)||(13596700-13596914)
chr7 (187-294)||(26754770-26754878)
chr7 (237-286)||(3566493-3566542)
[»] chr6 (2 HSPs)
chr6 (78-294)||(15609892-15610109)
chr6 (87-173)||(5827361-5827447)
[»] chr8 (5 HSPs)
chr8 (27-294)||(10260161-10260429)
chr8 (235-294)||(17834496-17834555)
chr8 (74-173)||(8783328-8783427)
chr8 (235-300)||(9605063-9605127)
chr8 (78-130)||(9605190-9605242)
[»] chr1 (5 HSPs)
chr1 (75-273)||(32922854-32923053)
chr1 (161-294)||(42131903-42132037)
chr1 (74-294)||(44021973-44022188)
chr1 (226-277)||(27394515-27394566)
chr1 (76-173)||(39220710-39220807)
[»] scaffold0913 (1 HSPs)
scaffold0913 (87-300)||(3334-3549)
[»] scaffold0898 (1 HSPs)
scaffold0898 (87-300)||(2052-2267)
[»] chr4 (1 HSPs)
chr4 (74-173)||(48026340-48026439)
[»] chr5 (2 HSPs)
chr5 (74-149)||(17237706-17237781)
chr5 (188-294)||(17237556-17237663)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 36098515 - 36098813
Alignment:
Q  7 gtgagatgaattaaaccaagtgaaggatgatttaagtgcaatattaatgnnnnnnnctcctaatatactaatagagttggaataggagtttgcataagag 106  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  36098515 gtgaaatggattaaaccaagtgaaggatgatttaagtgcaatattaatgtttttttctcctaatatactaatagagttggaataggagtttgcataagag 36098614  T
Q  107 atgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttggggaaacggttaacttgttatcaactttagaatg 206  Q
    |||||||||||||||||||||||||||||| | || ||||||||| ||||||  ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  36098615 atgatacacacatttttgttttggtaaaaattgaagagtttactccagtatg--aggtacatgttggggaaactgttaaattgttgtcaactttagaatg 36098712  T
Q  207 gatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatcaggatgttatagagtattgca 306  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  36098713 ggtcatcatctacattttgaatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatatgcacatcaggatgttatagagtattgca 36098812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 294
Target Start/End: Complemental strand, 18579857 - 18579636
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||| |||||||||||||| ||||| |||||||||  || ||||||||||| ||||||| ||| |||||||| ||| ||| ||||||||||| |    
T  18579857 ctaatagagtgggaataggagtttgtataagggatgatacaggcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgtttg 18579758  T
Q  174 ggaaacggttaacttgttatcaactttagaatg-gatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttt 272  Q
     ||| |  ||   ||||||||| |||| ||||| | ||||||  |||| || ||| ||||  ||||||||||||||||| |||||||||| |||||||||    
T  18579757 cgaagctcttggattgttatcagctttggaatgagttcatcaattacacttgggacctatcgattttgagcttgatgccaaaaaagtggtggatagtttt 18579658  T
Q  273 tcatcatcacatcaggatgtta 294  Q
    |||||  ||| ||||| |||||    
T  18579657 tcatctgcacgtcaggttgtta 18579636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 294
Target Start/End: Complemental strand, 15745896 - 15745675
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||| ||||||||||| || |||||||||||||||   | ||||||||||||||||||| ||| | |||||| ||| | | |||| ||||||||    
T  15745896 ctaatagagtgggaataggagtctgtataagagatgatacaggtacttttgttttggtaaaaactgaatggcttactccagtctatgaggtgcatgttgg 15745797  T
Q  174 ggaaacggttaacttgttatcaactttagaat-ggatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttt 272  Q
     ||| |  |||  ||||||||| |||| |||| || ||||||  |||| || ||||||||  ||||||||||||||||| |||| ||||| |||||||||    
T  15745796 cgaagctcttagattgttatcagctttggaatgggttcatcaattacacttgggatctatcgattttgagcttgatgccaaaaacgtggtggatagtttt 15745697  T
Q  273 tcatcatcacatcaggatgtta 294  Q
    |||||  ||| | |||||||||    
T  15745696 tcatctgcacgttaggatgtta 15745675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 5848912 - 5849009
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgtt 171  Q
    |||||||||| |||||||||||||| |||||||||||||||  || ||||||||||  |||| |  ||| |||||||| ||| ||| |||||||||||    
T  5848912 ctaatagagtgggaataggagtttgtataagagatgatacatgcacttttgttttgacaaaagcataatggtttactccagtctgtgaggtacatgtt 5849009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 300
Target Start/End: Complemental strand, 33171234 - 33171009
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||| | |||||||||||| ||||| ||||| | ||||  |||||||||||  |||||| ||| |||||||||| | | | |||||||||||||    
T  33171234 ctaatagagtggtaataggagtttgtataagggatgacatacac--ttttgttttggctaaaactgaatggtttactctaatctctgaggtacatgttgg 33171137  T
Q  174 ggaaacggttaacttgttatcaactttagaatg-gatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttt 272  Q
     ||| |  ||   |||||||||  ||||||||| | | ||||  |||| || |   ||||  ||||||||||||||||| |||||  | | |||||||||    
T  33171136 cgaagctcttggattgttatcagatttagaatgagtttatcaattacacttggttcctatcgattttgagcttgatgccaaaaaaaagatggatagtttt 33171037  T
Q  273 tcatcatcacatcaggatgttatagagt 300  Q
    |||||  ||||||||||||||| |||||    
T  33171036 tcatctgcacatcaggatgttacagagt 33171009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 30355483 - 30355416
Alignment:
Q  229 ctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatcaggatgttata 296  Q
    ||||| ||||||| ||||||||| | |||||||| |||||||||||||   ||||||| |||||||||    
T  30355483 ctattgattttgaacttgatgccaataaagtggtggatagtttttcatttgcacatcatgatgttata 30355416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 294
Target Start/End: Complemental strand, 52585965 - 52585744
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||| |||||| ||||||| ||||||||||||||| ||| ||||||||||| ||||||| ||| |||||||| ||||||| ||||||||||||     
T  52585965 ctaatagagtgggaataagagtttgtataagagatgatacagacacttttgttttggcaaaaactgaatggtttactccagtatgtgaggtacatgttga 52585866  T
Q  174 ggaaacggttaacttgttatcaactttagaat-ggatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttt 272  Q
     ||| |  ||    | || ||| ||||||||| || ||||||  |||| || ||| ||||  |||||||||||||||   |||||||||| |||||||||    
T  52585865 cgaagctcttggactattgtcagctttagaatgggttcatcacttacacttgggacctatcgattttgagcttgatgttaaaaaagtggtggatagtttt 52585766  T
Q  273 tcatcatcacatcaggatgtta 294  Q
    |||||  |||||||||||||||    
T  52585765 tcatctgcacatcaggatgtta 52585744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 276
Target Start/End: Original strand, 20685184 - 20685387
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||| ||||||| |||||| ||||| |||| ||||  || |||||||| || ||||||| ||| |||||||| ||||||| |||||||||||||    
T  20685184 ctaatagagtgggaatagcagtttgtataagggatgttacattcacttttgtttcggcaaaaactgaatcgtttactccagtatgtgaggtacatgttgg 20685283  T
Q  174 ggaaacggttaacttgttatcaactttagaatgga-tcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttt 272  Q
      || |  ||   |||||||||||||| ||||||| ||||||  |||| || ||| | ||  |||||||||||| |||| ||| |||||| |||||||||    
T  20685284 tcaagctcttggattgttatcaactttggaatggattcatcaattacacttgggaccaatcaattttgagcttgttgccaaaacagtggtggatagtttt 20685383  T
Q  273 tcat 276  Q
    ||||    
T  20685384 tcat 20685387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 294
Target Start/End: Original strand, 53581064 - 53581286
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagag-atgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttg 172  Q
    |||||||||| |||||||||||||| |||  || ||||||||  || ||||||||||| ||||||| ||| |||||||||||| ||| ||||||||||||    
T  53581064 ctaatagagtgggaataggagtttgtatataaggatgatacatgcacttttgttttggcaaaaactgaatggtttactctagtctgtgaggtacatgttg 53581163  T
Q  173 gggaaacggttaacttgttatcaactttagaat-ggatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagttt 271  Q
    | ||| |  ||   ||||||||| |||| |||| || ||||||  |||| ||  || ||||  |||||||||| |||| | |||||||||| ||||||||    
T  53581164 gtgaagctcttggattgttatcagctttggaatgggttcatcaattacacttgagaactatcaattttgagctagatgtcaaaaaagtggtggatagttt 53581263  T
Q  272 ttcatcatcacatcaggatgtta 294  Q
    |||||   ||| |||||||||||    
T  53581264 ttcatttgcacgtcaggatgtta 53581286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 286
Target Start/End: Complemental strand, 39453351 - 39453185
Alignment:
Q  120 ttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttggggaaacggttaacttgttatcaactttagaatggatcatcatctac 219  Q
    ||||||| ||||||| ||| |||  |||||||||||  || ||||| ||||||| ||| |  |||  ||||||||| ||||||||||| |||| |  |||    
T  39453351 ttttgttatggtaaagactgaatgatttactctagtccgtgaggtatatgttggcgaagctcttagattgttatcagctttagaatggttcattaattac 39453252  T
Q  220 attttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatca 286  Q
    ||||  || ||||  ||||||||||||||| | |||||||||| ||||||||||||||| |||||||    
T  39453251 atttgagacctatcgattttgagcttgatgtcaaaaaagtggtggatagtttttcatcagcacatca 39453185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 294
Target Start/End: Original strand, 4136240 - 4136391
Alignment:
Q  144 gtttactctagtatgttaggtacatgttggggaaacggttaacttgttatcaactttagaatggat-catcatctacattttggatctatttattttgag 242  Q
    |||||||  ||||||| ||||||||||||| ||| |  ||   ||||||||| ||||||||||| | |||||  ||||||| ||| ||||  |||| |||    
T  4136240 gtttactgcagtatgtgaggtacatgttggcgaagctcttggattgttatcagctttagaatgggttcatcaattacatttgggacctatcgatttcgag 4136339  T
Q  243 cttgatgcctaaaaagtggtagatagtttttcatcatcacatcaggatgtta 294  Q
     ||  |||| |||||||||| ||||||||||||||  || ||||| ||||||    
T  4136340 gttcgtgccaaaaaagtggtggatagtttttcatctccagatcagaatgtta 4136391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 294
Target Start/End: Original strand, 22910952 - 22911173
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||| ||| ||||||||||| || ||||| |||||||||   | ||||||||||| ||||||||||| | |||||| ||||||| |||||||||||||    
T  22910952 ctaatatagtgggaataggagtctgtataagggatgatacatgtacttttgttttggcaaaaactaaatggcttactccagtatgtgaggtacatgttgg 22911051  T
Q  174 ggaaacggttaacttgttatcaactttagaat-ggatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttt 272  Q
     ||| |   ||  ||||||||| |||| |||| || ||||||  ||||||| |||| |||  ||||||||||||||| | |||||||||| |||||||||    
T  22911052 cgaagctcgtagattgttatcagctttggaatgggttcatcaattacatttgggatttatcgattttgagcttgatggcaaaaaagtggtggatagtttt 22911151  T
Q  273 tcatcatcacatcaggatgtta 294  Q
    |||||   || |||||||||||    
T  22911152 tcatctgtacgtcaggatgtta 22911173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 294
Target Start/End: Complemental strand, 23040395 - 23040174
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||| ||||||||||| || ||||  |||||||||  || |||| |||||| ||||||| ||| |||||||| ||| ||| |||||||||||||    
T  23040395 ctaatagagtgggaataggagtctgtataaaggatgatacaggcacttttattttggcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 23040296  T
Q  174 ggaaacggttaacttgttatcaactttagaat-ggatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttt 272  Q
     |||||  ||   ||||||||| || | |||| || | |||   |||| || ||| ||||  ||||||||||||||||| |||||||||| || ||||||    
T  23040295 cgaaactcttggattgttatcatctatggaatgggttaatccattacacttgggacctatcgattttgagcttgatgccaaaaaagtggtggacagtttt 23040196  T
Q  273 tcatcatcacatcaggatgtta 294  Q
    |||||  |||||||||||||||    
T  23040195 tcatctacacatcaggatgtta 23040174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 48859167 - 48859441
Alignment:
Q  19 aaaccaagtgaaggatgatttaagtgcaatattaatgnnnnnnnctcctaatatactaatagagttggaataggagtttgcataagagatgatacacaca 118  Q
    ||||||| ||||||| ||||||||||||||||| |||       |||| ||  | ||||||||||  ||||| ||||||| ||||| |||||||||  ||    
T  48859167 aaaccaactgaaggaagatttaagtgcaatattgatgcttctttctcccaactttctaatagagtgagaataagagtttgtataagggatgatacatgca 48859266  T
Q  119 tttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttggggaaacggttaacttgttatcaactttagaatg-gatcatcatct 217  Q
    |||||||||||| ||||||| |||  |||||||  || ||| ||| ||||||||| ||| |   ||  |  ||||||||||||||||| | | || |  |    
T  48859267 tttttgttttggcaaaaactgaatgatttactccggtctgtgaggcacatgttggcgaagc-tctagatgattatcaactttagaatgagtttattaatt 48859365  T
Q  218 acattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatcaggatgtt 293  Q
    ||| ||  || ||||  ||||||||||||||||| |||||||| | |||| |||||||||  ||||||||||||||    
T  48859366 acacttgagacctatcgattttgagcttgatgccaaaaaagtgatggatattttttcatctgcacatcaggatgtt 48859441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 290
Target Start/End: Original strand, 13596700 - 13596914
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||| ||||||| |||||| |||||||||||  ||     ||||||||||| ||||||| ||| |||||||| ||| ||  |||||||||||||    
T  13596700 ctaatagagtgggaatagaagtttgtataagagatgaggcaa----ttttgttttggcaaaaactgaatggtttactcgagtctgggaggtacatgttgg 13596795  T
Q  174 ggaaacggttaacttgttatcaactttagaatggat-catcatctacattttggatctatttattttgagcttgatgcctaaaaa-gtggtagatagttt 271  Q
     ||| |  ||    |||||||| ||||||||||| | |||||  |||| || ||| ||||  ||||||||||||||||  ||||| || |||||||||||    
T  13596796 cgaagctcttggactgttatcagctttagaatgggttcatcagttacacttgggacctatcgattttgagcttgatgctaaaaaaagttgtagatagttt 13596895  T
Q  272 ttcatcatcacatcaggat 290  Q
    ||| ||  |||||||||||    
T  13596896 ttcctctgcacatcaggat 13596914  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 294
Target Start/End: Original strand, 26754770 - 26754878
Alignment:
Q  187 ttgttatcaactttagaatggat-catcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatc 285  Q
    ||||||||| ||||||||||| | |||||  |||| || ||| ||||  ||||||| ||||||||| |||| |||||  |||||||||||||  ||||||    
T  26754770 ttgttatcagctttagaatgggttcatcaattacacttgggacctatcgattttgaacttgatgccaaaaaggtggtgaatagtttttcatcggcacatc 26754869  T
Q  286 aggatgtta 294  Q
    |||||||||    
T  26754870 aggatgtta 26754878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 3566493 - 3566542
Alignment:
Q  237 tttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatca 286  Q
    |||||||||||||   |||||||||||||||||||||||||  |||||||    
T  3566493 tttgagcttgatgttaaaaaagtggtagatagtttttcatctgcacatca 3566542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 78 - 294
Target Start/End: Original strand, 15609892 - 15610109
Alignment:
Q  78 tagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttggggaa 177  Q
    |||||| |||||| ||||||| ||||| |||||||||  || ||||||||||| ||||||| |||  ||||||| ||| ||| || |||||||||| |||    
T  15609892 tagagtgggaatatgagtttgtataagggatgatacatgcacttttgttttggcaaaaactgaatgatttactccagtttgtgagctacatgttggtgaa 15609991  T
Q  178 acggttaacttgttatcaactttagaatg-gatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcat 276  Q
        ||   ||||||||| |||||||||| | ||||||  |||| || ||| ||||  ||||||||||||||||  |||||||||| |||||||||||||    
T  15609992 gatcttggattgttatcagctttagaatgagttcatcacttacacttaggacctatcgattttgagcttgatgcgaaaaaagtggtggatagtttttcat 15610091  T
Q  277 catcacatcaggatgtta 294  Q
    |  |||||||||||||||    
T  15610092 ctgcacatcaggatgtta 15610109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 5827361 - 5827447
Alignment:
Q  87 aataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    ||||||||| || ||||| ||||||||| ||| ||||||||||| ||||||| ||| |||||||| ||| ||| |||||||||||||    
T  5827361 aataggagtctgtataagggatgatacagacacttttgttttggcaaaaactgaatggtttactccagtctgtaaggtacatgttgg 5827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 294
Target Start/End: Original strand, 10260161 - 10260429
Alignment:
Q  27 tgaaggatgatttaagtgcaatattaatgnnnnnnnctcctaatatactaatagagttggaataggagtttgcataagagatgatacacacatttttgtt 126  Q
    ||||||| ||||||||| ||||||| |||       |||||||  | ||| |||||| |||||||||||||| ||||| |||||||||  || |||||||    
T  10260161 tgaaggaagatttaagtccaatattgatgcttctttctcctaactttctactagagtgggaataggagtttgtataagggatgatacatgcacttttgtt 10260260  T
Q  127 ttggtaaaaactaaatagtttactctagtatgttaggtacatgttggggaaacggttaacttgttatcaactttagaat-ggatcatcatctacattttg 225  Q
    |||||||||||| ||| |||||||| ||| ||| ||||||||||||| ||| |  ||    | ||  || ||||||||| || ||||||  || | || |    
T  10260261 ttggtaaaaactgaatggtttactccagtttgtgaggtacatgttggcgaagctcttggactatttccagctttagaatgggttcatcacttataattag 10260360  T
Q  226 gatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatcaggatgtta 294  Q
    || ||||  ||||||||||||||||  |||||||||| ||||||||||||||  ||||||| |||||||    
T  10260361 gacctatcgattttgagcttgatgctaaaaaagtggtggatagtttttcatctgcacatcatgatgtta 10260429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 17834555 - 17834496
Alignment:
Q  235 attttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatcaggatgtta 294  Q
    ||||||||||||||||  |||||||||| ||||||||||||||  |||||||||||||||    
T  17834555 attttgagcttgatgctaaaaaagtggtggatagtttttcatctgcacatcaggatgtta 17834496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 8783328 - 8783427
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||| |||||| ||||||| | ||| || ||||||  || |||| |||||  ||||||| ||  |||||||||||||||| | |||||||||||    
T  8783328 ctaatagagtgggaatatgagtttgtagaagggacgatacaagcacttttattttgacaaaaactgaacggtttactctagtatgtaatgtacatgttgg 8783427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 9605127 - 9605063
Alignment:
Q  235 attttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatcaggatgttatagagt 300  Q
    |||||||| |||| ||| |||||||||| |||||||||||||   ||||||| |||||||||||||    
T  9605127 attttgagtttgacgcc-aaaaagtggtggatagtttttcatttgcacatcaagatgttatagagt 9605063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 9605242 - 9605190
Alignment:
Q  78 tagagttggaataggagtttgcataagagatgatacacacatttttgttttgg 130  Q
    |||||| |||||| ||||||| ||||| ||||||||| ||| |||||||||||    
T  9605242 tagagtgggaataagagtttgtataagggatgatacaaacacttttgttttgg 9605190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 32922854 - 32923053
Alignment:
Q  75 taatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttggg 174  Q
    ||||||| | |||||| ||||||| ||||| ||||||  |  || ||||||||||| ||||||| ||| |||||||| ||| ||| | |||||||||||     
T  32922854 taatagactgggaataagagtttgtataagggatgatgtaggcacttttgttttggcaaaaactgaatggtttactccagtttgtgatgtacatgttggc 32922953  T
Q  175 gaaacggttaacttgttatcaactttagaatggat-catcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagttttt 273  Q
    |||||  ||   ||||||||| ||||||||| ||| |||||  ||||||||| | ||||  ||||||||||||||||| |||||||  ||||||||||||    
T  32922954 gaaacttttggattgttatcagctttagaattgattcatcaattacattttgaacctatcgattttgagcttgatgccaaaaaagtaatagatagttttt 32923053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 294
Target Start/End: Original strand, 42131903 - 42132037
Alignment:
Q  161 aggtacatgttggggaaacggttaacttgttatcaactttagaatggat-catcatctacattttggatctatttattttgagcttgatgcctaaaaagt 259  Q
    ||||||||||||| |||||  ||   |||||||||||||| |||||| | |||||  |||| ||  || ||||  |||||||||||| |||| |||||||    
T  42131903 aggtacatgttggcgaaactcttggattgttatcaactttcgaatgggttcatcaattacacttgtgacctatcgattttgagcttggtgccaaaaaagt 42132002  T
Q  260 ggtagatagtttttcatcatcacatcaggatgtta 294  Q
    ||| ||||||||||||||  |||||||||||||||    
T  42132003 ggtggatagtttttcatctgcacatcaggatgtta 42132037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 294
Target Start/End: Original strand, 44021973 - 44022188
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||| ||| |||||||||||||| ||||  ||||||||| ||||||||||||||| ||||||| ||| ||| |||  ||| ||| |||     |||||    
T  44021973 ctaataaagtgggaataggagtttgtataatggatgatacagacatttttgttttggcaaaaactgaatggttaacttcagtttgtgagg-----gttgg 44022067  T
Q  174 ggaaacggttaacttgttatcaactttagaat-ggatcatcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttt 272  Q
     ||| |  ||    |||||||| ||||||||| || ||||||  |||| || ||| ||| | ||||||| ||||||||| |||||||||| ||| |||||    
T  44022068 cgaagctcttggactgttatcagctttagaatgggttcatcacttacacttgggaccta-tcattttgaacttgatgccaaaaaagtggtggatggtttt 44022166  T
Q  273 tcatcatcacatcaggatgtta 294  Q
    |||||  ||||| |||||||||    
T  44022167 tcatctgcacattaggatgtta 44022188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 27394515 - 27394566
Alignment:
Q  226 gatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatc 277  Q
    |||||||||||||||||||||||||  |||| |||||  |||||||||||||    
T  27394515 gatctatttattttgagcttgatgctaaaaaggtggtgaatagtttttcatc 27394566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 39220710 - 39220807
Alignment:
Q  76 aatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    |||||||||||||||||||| |||||||  |||||||||  || ||||||||| |  |||||| ||| ||||| || | | ||| |||| ||||||||    
T  39220710 aatagagttggaataggagtatgcataatggatgatacatgcacttttgttttagcgaaaactgaatggtttagtccaatttgtgaggtgcatgttgg 39220807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 300
Target Start/End: Original strand, 3334 - 3549
Alignment:
Q  87 aataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttggggaaacggttaac 186  Q
    |||| ||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||| |||||||| ||| ||| ||||||||||||| ||| |  |        
T  3334 aataagagtttgtataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtgaggtacatgttggcgaagctctagga 3433  T
Q  187 ttgttatcaactttagaat-ggatcatcatctacattttggatctatttattttga-gcttgatgcctaaaaagtggtagatagtttttcatcatcacat 284  Q
    |||| |||  ||||||||| || |||||| ||||||||  || ||||  ||||| | |||||||| | |||| ||||| |||| |||||||||  |||||    
T  3434 ttgtcatcggctttagaatgggttcatcaactacatttgagacctatcgattttcatgcttgatgacaaaaaggtggtggataatttttcatctgcacat 3533  T
Q  285 caggatgttatagagt 300  Q
    |||||||||| |||||    
T  3534 caggatgttacagagt 3549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 2267 - 2052
Alignment:
Q  87 aataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttggggaaacggttaac 186  Q
    |||| ||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||| |||||||| ||| ||| ||||||||||||| ||| |  |        
T  2267 aataagagtttgtataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtgaggtacatgttggcgaagctctagga 2168  T
Q  187 ttgttatcaactttagaat-ggatcatcatctacattttggatctatttattttga-gcttgatgcctaaaaagtggtagatagtttttcatcatcacat 284  Q
    |||| |||  ||||||||| || |||||| ||||||||  || ||||  ||||| | |||||||| | |||| ||||| |||| |||||||||  |||||    
T  2167 ttgtcatcggctttagaatgggttcatcaactacatttgagacctatcgattttcatgcttgatgacaaaaaggtggtggataatttttcatctgcacat 2068  T
Q  285 caggatgttatagagt 300  Q
    |||||||||| |||||    
T  2067 caggatgttacagagt 2052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 48026439 - 48026340
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttactctagtatgttaggtacatgttgg 173  Q
    ||||||||||  ||||||||||||| ||||| |||||||||  || ||||||||||| ||||||| ||| |||||||  ||| ||| |||||||||||||    
T  48026439 ctaatagagtgagaataggagtttgtataagggatgatacatgcacttttgttttggcaaaaactgaatggtttacttcagtctgtgaggtacatgttgg 48026340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 17237781 - 17237706
Alignment:
Q  74 ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaactaaatagtttac 149  Q
    |||||||||| |||||| ||||||| ||||| ||||||||| ||| ||||||||||| ||||||| ||| ||||||    
T  17237781 ctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaactgaatggtttac 17237706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 17237663 - 17237556
Alignment:
Q  188 tgttatcaactttagaatggat-catcatctacattttggatctatttattttgagcttgatgcctaaaaagtggtagatagtttttcatcatcacatca 286  Q
    |||||||| ||||||||||| | |||||  |||| || ||| ||||  ||||||||||||| ||   ||||||||| ||||||||||||||  |||||||    
T  17237663 tgttatcagctttagaatgggttcatcacttacacttgggacctatcgattttgagcttgacgctagaaaagtggtggatagtttttcatctccacatca 17237564  T
Q  287 ggatgtta 294  Q
     |||||||    
T  17237563 tgatgtta 17237556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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