View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_3 (Length: 676)
Name: NF17302_low_3
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 619; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Original strand, 47280945 - 47281603
Alignment:
| Q |
1 |
aatcattgattaataattatataaataaatgagagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47280945 |
aatcattgattaataattatataaataaatgagagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatccccccaacttac |
47281044 |
T |
|
| Q |
101 |
ttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47281045 |
ttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtc |
47281144 |
T |
|
| Q |
201 |
tatgttttctcgcaacatagtcaatgcagttattgcttcactagttgtggttactgcaatcccaagtcaaaaataaataagatagatattattcagaacg |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47281145 |
tatgttttcttgcaacatagtcaatgcagttattgcttcactagttgtggttactgcaatcccaagtcaaaaataaataagatagatattattcagaacg |
47281244 |
T |
|
| Q |
301 |
agcaaa-tacactttgcatgtatatccaggactagaacagagcaattgtgatatacttgaaaaacaaaaattctaaccatgtggaaatagagagattctg |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
47281245 |
agcaaagtacactttgcatgtatatccaggactagaacagagcaattgtgaaatacttgaaaaacaaaaattctaaccatgtagaaatagagagattctg |
47281344 |
T |
|
| Q |
400 |
aaatccaagcaataacaggtacaaagtataataaaataattaaccatatctctcggcacataaatttgacataaagtatcaaaaaagaagcagaccgtgg |
499 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47281345 |
aaatccaagcaataacaggtacaaagtataataaaataattaaccatatctctcggcacataaatttgacataaagtataaaaaaagaagcagaccgtgg |
47281444 |
T |
|
| Q |
500 |
tattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaactgatcactggaat |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
47281445 |
tattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaaccgatcactgaaat |
47281544 |
T |
|
| Q |
600 |
catccattattctctcttctctactatgcacaaaccactcactcacaacgtaaactatg |
658 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47281545 |
catccattattctctcttctctactatgcacaaaccacttactcacaacgtaaactatg |
47281603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 47275265 - 47275529
Alignment:
| Q |
1 |
aatcattgattaataattatataaataaatgagagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||| |||| | ||||||||| |||| ||||| |
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|
| T |
47275265 |
aatcattgattaataattatatgaataaatgagagtgaaaatgaagaaacaaagcaaagatgaagaactgaagattacagaacagatcccccca-cttac |
47275363 |
T |
|
| Q |
101 |
ttatgaca---ggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacat |
197 |
Q |
| |
|
||| ||| ||||| ||| | |||||| | |||||||| |||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||| | |
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|
| T |
47275364 |
ttacgacgaccggaaggtccgtctcaagttccacaagttcaagcagcttaagtccatccatgtcaggcaggtgcacatcagcgattaccaggtcaaactt |
47275463 |
T |
|
| Q |
198 |
gtctatgttttctcgcaacatagtcaatgcagttattgcttcactagttgtggttactgcaatccc |
263 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||| |
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|
| T |
47275464 |
gtctttgttttctcgcaacatagtcaatgccgtttttgcttgactagttgtcgttactgcaatccc |
47275529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 90 - 276
Target Start/End: Original strand, 49061160 - 49061346
Alignment:
| Q |
90 |
tcccaacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccagg |
189 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||| |||||||| |||||||| | |||||||||||| |||||||| || ||| |||||||||| |
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|
| T |
49061160 |
tccccacttacttatgacgggaaggtccatttcaagtcccacaagttcaagcagcttaaatccatccatgtccggcatgtgtacatcactgattaccagg |
49061259 |
T |
|
| Q |
190 |
tcaaacatgtctatgttttctcgcaacatagtcaatgcagttattgcttcactagttgtggttactgcaatcccaagtcaaaaataa |
276 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| ||||| || |||||||||| |||||||||||||||||||||||| ||||| |||||| |
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|
| T |
49061260 |
tcaaacttgtctttgttttctctcaacatggtcaacgccgttattgcttgactagttgtggttactgcaatccccagtcagaaataa |
49061346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 271 - 435
Target Start/End: Original strand, 38099213 - 38099392
Alignment:
| Q |
271 |
aaataaataagatagatattattcagaacga----gcaaa-tacactttgcatgtatatcca-------ggactagaacaga--gcaattgtgatatact |
356 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||| || ||||| |||||||||| ||||| |
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|
| T |
38099213 |
aaataaataagatagttattattcagaacgatcgagcaaagtacactttgcatgtatatccattatccaggaccagcacagaaagcaattgtgaaatact |
38099312 |
T |
|
| Q |
357 |
tgaaaaacaaaa-attctaaccatgtggaaatagagagattctgaaatccaagcaataacaggtacaaagtataataaaa |
435 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
38099313 |
tgaaaaacaaaaaattctaaccatgtacaaatagagagattctgaaatccaagcaataacatgtacaaagtataataaaa |
38099392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 497 - 636
Target Start/End: Original strand, 38099474 - 38099613
Alignment:
| Q |
497 |
tggtattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaactgatcactgg |
596 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||| | ||||| || | | |||| |||| ||| |||||||| ||||||||||||||||| ||||||||| |
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|
| T |
38099474 |
tggtattgacatgttcggaggcgagtttctaaatccgagagataattggaatcaccgtctacgacaagaacatgcattccgatgggaaaccgatcactgg |
38099573 |
T |
|
| Q |
597 |
aatcatccattattctctcttctctactatgcacaaacca |
636 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38099574 |
aatcatccattattctctcttctctactacgcacaaacca |
38099613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 492 - 616
Target Start/End: Original strand, 49062346 - 49062470
Alignment:
| Q |
492 |
gaccgtggtattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaactgatc |
591 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| ||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||| | || |
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|
| T |
49062346 |
gaccgtggtattgacatcttcggagaagagtttccaaaaccaagagacaagttggatcgtcgtcaacggcgagaacacgcattccgataggaaaacggtc |
49062445 |
T |
|
| Q |
592 |
actggaatcatccattattctctct |
616 |
Q |
| |
|
|| ||||||| ||||| |||||||| |
|
|
| T |
49062446 |
accggaatcaaccatttttctctct |
49062470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 482 - 625
Target Start/End: Original strand, 47276046 - 47276189
Alignment:
| Q |
482 |
aaaagaagcagaccgtggtattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgg |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||| | ||| |||| ||||| ||||||||||||||||| | |
|
|
| T |
47276046 |
aaaagaagcagaccgtggtattgacatgatcggagacgagtttctaaatccgagagatgagtggaatcgccgtcgacggcgagaacacgcattccgattg |
47276145 |
T |
|
| Q |
582 |
gaaactgatcactggaatcatccattattctctcttctctacta |
625 |
Q |
| |
|
||||| | |||||||| || ||||| |||||||||||||||||| |
|
|
| T |
47276146 |
gaaaccggtcactggagtcgtccataattctctcttctctacta |
47276189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 34316118 - 34316047
Alignment:
| Q |
98 |
tacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgt |
169 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||| |||| || || |||| ||||||||||||||||||| |
|
|
| T |
34316118 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgt |
34316047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 48870446 - 48870569
Alignment:
| Q |
94 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaa |
193 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| | | |||||| ||||||| |
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|
| T |
48870446 |
aacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaa |
48870545 |
T |
|
| Q |
194 |
acatgtctatgttttctcgcaaca |
217 |
Q |
| |
|
| ||| | ||||||||| ||||| |
|
|
| T |
48870546 |
aattgtttttgttttctctcaaca |
48870569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 592
Target Start/End: Original strand, 48871585 - 48871630
Alignment:
| Q |
547 |
atcatcgtcaacggcaagaacacgcattccgatgggaaactgatca |
592 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
48871585 |
atcatcatcaacagcaagaacacgcattccgataggaaacttatca |
48871630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 2888633 - 2888554
Alignment:
| Q |
94 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
173 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
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|
| T |
2888633 |
aacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2888554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 2904736 - 2904657
Alignment:
| Q |
94 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
173 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
|
|
| T |
2904736 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2904657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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