View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_30 (Length: 317)
Name: NF17302_low_30
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 33449383 - 33449085
Alignment:
| Q |
1 |
tcataatgagtttcaaaatgcataagatttccaataaatttcnnnnnnngacagcaaaaatttccaaaaaattgatcttctggatttagagtactaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
33449383 |
tcataatgagtttcaaaatgcataagatttccaataaatttctttttttgacagcaaaaatttccaaaaaattgatcttctggattgagagcaataacat |
33449284 |
T |
|
| Q |
101 |
atttgtgagttttacatagctatctagtagcatgttagtgagtgcctcaatattaagcttcatctattcattatgaattcatagaaatgtctgaagtgag |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33449283 |
atttgtgcgttttacatagctatctagtagcatgttagtgagtgcctcaatattaagcttcatctattcattatgaattcatagaaatgtctgaagtgag |
33449184 |
T |
|
| Q |
201 |
aaacttcaagcatatgtatgttacagagagtgaaaaagggctacatatgtgtacaaacaatctaaaatgaaatttattgtgtaccatacatgcacaagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33449183 |
aaacttcaagcatatgtatgttacagagagtgaacaagggctacatatgtgtacaaacaatctaaaatgaaatttattgtgtaccatacatgcacaagt |
33449085 |
T |
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