View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_32 (Length: 315)
Name: NF17302_low_32
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 23747065 - 23747350
Alignment:
| Q |
18 |
gtatatggatttgtgttgaagtagttttgagatttttatggtttgtgatgatttaggtatttggaagagaatctctgcgctcagcaatgaatggaaaaac |
117 |
Q |
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| T |
23747065 |
gtatatggatttgtgttgaagtagttttgagatttttatggtatgtgatgatttaggtatttggaagagaatctctgcgctcagcaatgaatggaaaaac |
23747164 |
T |
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| Q |
118 |
tgccactgagggatcaaactccaaaattgatactcaaggttgatattctctgtttttatgcatctctacttaaaatatttgcatgttatatcagttgttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23747165 |
tgccactgagggatcaaactccaaaattgatactcaaggttgatattctctg--tttatgcatctctacttaaaatatttgcatgttatatcagttgttt |
23747262 |
T |
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| Q |
218 |
gtaatattccaaaatgaggttttgataaaatcgcatgttgtcaaataatagacgtagccgaatttgaacaaatcgctattgttctgtg |
305 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23747263 |
gtaatattccaaaatgaggttttgataaaatcgcgtgttgtcaaataatagacgtagccgaatttgaacaaatagctattgttctgtg |
23747350 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 20710026 - 20709992
Alignment:
| Q |
269 |
acgtagccgaatttgaacaaatcgctattgttctg |
303 |
Q |
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| T |
20710026 |
acgtagcggaatttgaacaaatcgctattgttctg |
20709992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 10011985 - 10011953
Alignment:
| Q |
270 |
cgtagccgaatttgaacaaatcgctattgttct |
302 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
10011985 |
cgtagcagaatttgaacaaatcgctattgttct |
10011953 |
T |
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