View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_34 (Length: 311)
Name: NF17302_low_34
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 17493157 - 17493447
Alignment:
| Q |
8 |
aagctttttatcctatggtacctaatcatttatatcttattgattgtaataattatatgaagctagtaaaaactattggagctgataatcttgatggtaa |
107 |
Q |
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| T |
17493157 |
aagctttttatcctatggtacctaatcatttatatcttattgattgtaataattatatgaagctagtaaaaactattggagctgataatcttgatggtaa |
17493256 |
T |
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| Q |
108 |
attttttgtaggttggatgttg-agatggtaaagaaattaatcttgagaaatgtccaagggccacccttcaacgccagtgcattaaatatcttggaccag |
206 |
Q |
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| T |
17493257 |
attttttgtaggttggatgttggagatggtaaagaaattaatcttgagaaatgtccaagggccacccttcaacgccagtgcattaaatatcttggaccag |
17493356 |
T |
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| Q |
207 |
taagttatcaatagattatatcacatttgtaatcaaaattatgatagtaaatttttaggtatacatcgaactcggtacttcagggtttata |
297 |
Q |
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| T |
17493357 |
taagttatcaatagattatatcacatttgtaatcaaaattatgataataaatttttaggtatacatcgaactcggtacttcagggtttata |
17493447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 52368461 - 52368354
Alignment:
| Q |
112 |
tttgtaggttggatgttg-agatggtaaagaaattaatcttgagaaatgtccaagggccac---ccttcaacgccagtgcattaaatatcttggaccagt |
207 |
Q |
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|||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||| || ||||| || ||||||||||||||||||||||| |
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| T |
52368461 |
tttgtaggttggatgttggagatggaaaagaaataaatcttgagaaatgtccaagaagcactgttctacaacggcaatgcattaaatatcttggaccagt |
52368362 |
T |
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| Q |
208 |
aagttatc |
215 |
Q |
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| T |
52368361 |
aagttatc |
52368354 |
T |
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