View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_37 (Length: 292)
Name: NF17302_low_37
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_37 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 11472811 - 11472556
Alignment:
| Q |
21 |
acacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacactta |
120 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
11472811 |
acacttactattatcaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttgtaacattatacaaatcacactta |
11472712 |
T |
|
| Q |
121 |
cactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggat |
220 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472711 |
cactcaatacaccccattctatcttccacacccctggtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggat |
11472612 |
T |
|
| Q |
221 |
taccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
276 |
Q |
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|||||||||||||||||||||||| |||||||||| || |||||||||||||||| |
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| T |
11472611 |
taccaacttctatgccataagggtcaggaatatatgtatttgtgcctcttgtttca |
11472556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 11479203 - 11478948
Alignment:
| Q |
21 |
acacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacactta |
120 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
11479203 |
acacttactattatcaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttgtaacattatacaaatcacactta |
11479104 |
T |
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| Q |
121 |
cactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggat |
220 |
Q |
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| T |
11479103 |
cactcaatacaccccattctatcttctacacccctagtatcaatagcatgaacattaatcaaccatttttccacatacccttttggaatttcttcatgat |
11479004 |
T |
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| Q |
221 |
taccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
276 |
Q |
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| T |
11479003 |
taccaacttctattccataaggttgaggaatatatgtatttgtgcctcttgtttca |
11478948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 11485472 - 11485219
Alignment:
| Q |
21 |
acacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacactta |
120 |
Q |
| |
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|||||||||||||| |||||||||||||||||| || ||||||||||||||||| || |||||||||||||||| ||||| |||||| ||||||||| |
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| T |
11485472 |
acacttactattatcaggacaacattgcaatcctcctttataatttggactcaaagcttctccattttcatcctttgtaacaccatacaaatcacactta |
11485373 |
T |
|
| Q |
121 |
cactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggat |
220 |
Q |
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|||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
11485372 |
cactcagtacaccccattctatcttctacacc--tagtatcaatagcatgaacattaataaaccatttttccacatacccttttggaatttcttcaggat |
11485275 |
T |
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| Q |
221 |
taccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
276 |
Q |
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|||||||||||||||||||||||| |||||||||| || |||||||||||||||| |
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| T |
11485274 |
taccaacttctatgccataagggtcaggaatatatgtatttgtgcctcttgtttca |
11485219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 276
Target Start/End: Complemental strand, 11462550 - 11462372
Alignment:
| Q |
98 |
taacattatacaagtcacacttacactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgta |
197 |
Q |
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|||||||||| | |||||| ||||||||||||||||||| | |||||||||||||||| |||||||| ||||| ||||| || | ||||||||| | || |
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| T |
11462550 |
taacattatataggtcacatttacactcaatacaccccattatatcttccacaccccttgtatcaattgcatggacattgatcatccatttttcatcata |
11462451 |
T |
|
| Q |
198 |
cccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
276 |
Q |
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| T |
11462450 |
ccctttaggaatttgtgaaggattaccaatttctactccataagggtcaggaatatatgtatctgtgcctctagtttca |
11462372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 275
Target Start/End: Complemental strand, 21546907 - 21546654
Alignment:
| Q |
22 |
cacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacacttac |
121 |
Q |
| |
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||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| || ||||||||||| ||| | ||||| || | |||||| | |
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| T |
21546907 |
cacttactattatcagggcaacattgcaaaccccctttataatttggactcaaagcattaccattttcatcttttgtgacattgtataggtcacatgagc |
21546808 |
T |
|
| Q |
122 |
actcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggatt |
221 |
Q |
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|||||||||| |||| | || ||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
21546807 |
actcaatacatcccacccggtcatccacacccctcgtatcaattgcatgaacattgatcaaccatttctccacatacccttttggaatttcagcaggatt |
21546708 |
T |
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| Q |
222 |
accaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttc |
275 |
Q |
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|||||||||||| |||||||||| |||||||||| || ||||| ||||||||| |
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| T |
21546707 |
accaacttctataccataagggtctggaatatatgtatttgtgcttcttgtttc |
21546654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 47576 - 47322
Alignment:
| Q |
22 |
cacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacacttac |
121 |
Q |
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|||||| | |||| ||||||||||||||| ||||| ||||||||||||||||| | ||||||||||| || |||||||||| | |||||| | | |
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| T |
47576 |
cacttagtgttatcaggacaacattgcaaaccccctttataatttggactcaaagcatcaccattttcatctttagtaacattatataggtcacatctgc |
47477 |
T |
|
| Q |
122 |
actcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggatt |
221 |
Q |
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| |||||||| |||| ||||||||||||||||| ||||||||| |||||| ||| || |||||||| || || || |||||||||||||| | ||||| |
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| T |
47476 |
aatcaatacatcccatcctatcttccacaccccttgtatcaataacatgaatattcatcaaccatttctctacataaccttttggaatttcagctggatt |
47377 |
T |
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| Q |
222 |
accaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
276 |
Q |
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|||||||||||| |||||||||| |||||||||| || |||||||||||||||| |
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| T |
47376 |
accaacttctataccataagggtctggaatatatgtatttgtgcctcttgtttca |
47322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 38227202 - 38227269
Alignment:
| Q |
157 |
gtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattacc |
224 |
Q |
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|||||||| ||||||||||||| |||||||| ||| | |||||| |||||| |||||||||||||| |
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| T |
38227202 |
gtatcaatggcatgaacattaagcaaccatttatcctcaaacccttgtggaatctcttcaggattacc |
38227269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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