View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_38 (Length: 289)
Name: NF17302_low_38
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 53635715 - 53635975
Alignment:
| Q |
19 |
gttttaacgatctcttccttagtttaaaccaaatgagttttgtgaagtacaatatttatactttaagctctagcaaatatcatcgtatgaatgttgaatt |
118 |
Q |
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| T |
53635715 |
gttttaacgatctcttccttagtttaaaccaaatgagttttgtgaagtacaatatttatactttaatctctagcaaatatcatcgtatgaatgttgaatt |
53635814 |
T |
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| Q |
119 |
atgcttcagggatggatttggcgtatttacgagagccaaaacacattatatccaaatcactcttgtagttttgttccaatagccaacaacatcactaatt |
218 |
Q |
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| T |
53635815 |
atgcttcagggatggatttggcgtatttacgagagccaaaacacattatatccaaatcactcttgtagttttgttccaatagccaacaacatcactaatt |
53635914 |
T |
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| Q |
219 |
atttcaaaagctaattcttatccattttatctccccttttcaactatcaagtggccctttg |
279 |
Q |
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| T |
53635915 |
atttcaaaagctaattcttatccattttatctccccttttcaactatcaagtggccctttg |
53635975 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 48336535 - 48336479
Alignment:
| Q |
212 |
actaattatttcaaaagctaattcttatccattttatctccccttttcaactatcaagtg |
271 |
Q |
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| T |
48336535 |
actatttatttcaaaagctaattctcatccattttat---ccctcttcaactatcaagtg |
48336479 |
T |
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