View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_4 (Length: 655)
Name: NF17302_low_4
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 16 - 639
Target Start/End: Original strand, 12970989 - 12971603
Alignment:
| Q |
16 |
atggaggtgatgaagccatgagtcatggaatctgttacatgggaatcatggatatgaagaattggaaatggtttacaaattaatttttggtaggaaggac |
115 |
Q |
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| T |
12970989 |
atggaggtgatgaagccatgagtcatggaatctgttacatgggaatcatggatatgaagaattggaaatggtttacaaattaatttttggtaggaa---- |
12971084 |
T |
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| Q |
116 |
tcttaagataccagacacttaaaaactaattgaataagtcttgctaatgagctcgccaagccggttagaagctatgttaatgtgaataattattgggacc |
215 |
Q |
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| T |
12971085 |
-----agataccagacactaaaaaactcattgaataagtcttgctaatgagctcgccaagccggttagaagctatgttaatgtgaataattattgggacc |
12971179 |
T |
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| Q |
216 |
tgaatgatttggatatcattgtgtcttacaatatctttgacagggttggaacgttggcatcttcaaccaatgctaacagggatgatattcttttttggcg |
315 |
Q |
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| T |
12971180 |
tgaatgatttggatatcattgtgtcttacaatatctttgacagggttggaacgttggcatcttcaaccaatgctaacagggatgatattcttttttggcg |
12971279 |
T |
|
| Q |
316 |
taaagcaaatgatgagggaatttttcatctcggtttgcttatgatatactcagtggagtagatggagaaacaatgttgagtcttagctcagggatgtctt |
415 |
Q |
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| T |
12971280 |
taaagcaaataatgagggaatttttcatctcggtttgcttatgatatactcagtggagtagatggagaaacaatgctgagtcttagctcagggatgtctt |
12971379 |
T |
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| Q |
416 |
tttactactgatcggcgagctcataagggcacggcacttgaattgagatatccattgtgtggttgaaatggtgagtctttagtgtacattctttgaggat |
515 |
Q |
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| T |
12971380 |
tttactactgatcggcgagctcataagggcacgacacttgaattgaaatatccattgtgtggttgaaatggtgagtctttactgtacattctttgaggat |
12971479 |
T |
|
| Q |
516 |
tttagttggggtctagaatttggaggtctataatttggaatgttcttcttagtgatttttggttgcatgaggaccaaatttgacttcttaataatatgag |
615 |
Q |
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| T |
12971480 |
tttagttggggtctagaatttggaggtctatagttgggaatgttcttcttagtgatttttggttgcatgaggaccaaatttgacttcttaataatatgcg |
12971579 |
T |
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| Q |
616 |
aggttgttatgtgaagaacaatag |
639 |
Q |
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| T |
12971580 |
aggttgttatgtgaagaacaatag |
12971603 |
T |
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