View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_42 (Length: 277)
Name: NF17302_low_42
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 13646161 - 13646409
Alignment:
| Q |
19 |
tttataggcttacttttggagtcattgatcgattgatgaaagttgttagagaatggaggaccatcaatgttcagctccgtacgttacaagtcattgaggt |
118 |
Q |
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| T |
13646161 |
tttataggcttacttttggagtcattgatcgattgatgaaagctgttagagaatggaggaccatcaatgttcaactccgtacgttacaagtcattgaggt |
13646260 |
T |
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| Q |
119 |
gttacaaaatggttgattcgggctattcgttggaagcattgatgagactgaaggattcaagatacttagtaaagtagatgagtttgggccataatgttta |
218 |
Q |
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| T |
13646261 |
gttacaaaatggatgattctagctattcgttcgaagcattgatgagactaaaggattcaaggtacttagtaaagtagatgagtttgggccataatgttta |
13646360 |
T |
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| Q |
219 |
tttgggtcttgtaggcctgaatttgataacatttcagcttttacctttg |
267 |
Q |
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| T |
13646361 |
tttgggtcttgtaggcctgaatttgataacatttcagcttttatctttg |
13646409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 31324823 - 31324981
Alignment:
| Q |
18 |
ttttataggcttacttttggagtcattgatcgattgatgaaagttgttagagaatggaggaccatcaatgttcagctccgtacgttacaagtcattgagg |
117 |
Q |
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||||||||||||| ||||||||| |||||| ||||| || || |||| ||||||| | ||||||||||| |||||||| |||||||| |||||| |
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| T |
31324823 |
ttttataggcttagttttggagttgttgatcagttgatcaaggtcgttacagaatggtgcaccatcaatgtcgagctccgtctagtacaagtcgttgagg |
31324922 |
T |
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| Q |
118 |
tgttacaaaatggttgattcgggctattcgttggaagcattgatgagactgaaggattc |
176 |
Q |
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| T |
31324923 |
cgttaccaagtggaagattatggctagccgttggaggcattgatgagacagaaggattc |
31324981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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