View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_43 (Length: 276)
Name: NF17302_low_43
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_43 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 20023130 - 20022854
Alignment:
| Q |
3 |
gaagaatatgaggaccaaacaatgagacaaatataataaaaggaataaattaccataaccaaaaagaagaaatgagccccctctcgttgcttccggtggc |
102 |
Q |
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| T |
20023130 |
gaagaaaatgaggaccaaacaatgagacaaatagaataaaaggaataaattaccataaccaaaaagaagaaatgagccccctctcgttgctgccggtggc |
20023031 |
T |
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| Q |
103 |
attctaactaccgcgatcgccccttgtgcttatgtcattgtgagacgaccactacatcccccttttgccgatgctttatctcactgccataaccaaattt |
202 |
Q |
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| T |
20023030 |
attctaactaccgcgatcgccccttgcgcttatgtcattgtgagacgaccactacatcccccttttgccgatgctttatctcactgccataaccaaattt |
20022931 |
T |
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| Q |
203 |
aggaaaaacactaatggttggatttacaatt---tgataaggctcatgtattatctcaagtattttgatccctaaaa |
276 |
Q |
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| T |
20022930 |
aggaaaaacactaatggttggatttacaatttgatgataaggctcatgtattatctcaagtatttttatccctaaaa |
20022854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 23159638 - 23159362
Alignment:
| Q |
3 |
gaagaatatgaggaccaaacaatgagacaaatataataaaaggaataaattaccataaccaaaaagaagaa---atgagccccctctcgttgcttccggt |
99 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||| ||||||||||||| ||||| |
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| T |
23159638 |
gaagaaaatgaggaccaaactatgagacaaatataataaaaggaataaatgaacataacaaaaaagaagaagaaatgagcgccctctcgttgctgccggt |
23159539 |
T |
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| Q |
100 |
ggcattctaactaccgcgatcgccccttgtgcttatgtcattgtgagacgaccactacatcccccttttgccgatgctttatctcactgccataaccaaa |
199 |
Q |
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| T |
23159538 |
ggcactctaactacggtggttgccccttgcgcttacgtcattgtgagacgaccacttcattccccttttgccgatgctttctctcactgcagtaaccaaa |
23159439 |
T |
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| Q |
200 |
tttaggaaaaacactaatggttggatttacaatttgataaggctcatgtattatctcaagtattttgatccctaaaa |
276 |
Q |
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| T |
23159438 |
tttaggacaaacactaatggttggatttacaatttgataaggctcatgtattatctcaagtattttgatccttaaaa |
23159362 |
T |
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