View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17302_low_44 (Length: 268)

Name: NF17302_low_44
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17302_low_44
NF17302_low_44
[»] chr5 (6 HSPs)
chr5 (19-258)||(25095952-25096191)
chr5 (19-258)||(25153922-25154161)
chr5 (29-242)||(25098745-25098955)
chr5 (29-242)||(25157835-25158045)
chr5 (29-208)||(31250794-31250970)
chr5 (147-176)||(32200143-32200172)
[»] chr1 (2 HSPs)
chr1 (29-219)||(26857730-26857917)
chr1 (147-210)||(3330527-3330590)
[»] chr8 (1 HSPs)
chr8 (29-215)||(18001937-18002120)
[»] chr6 (1 HSPs)
chr6 (29-207)||(10383237-10383411)
[»] chr4 (4 HSPs)
chr4 (29-215)||(7635687-7635870)
chr4 (147-215)||(50371648-50371716)
chr4 (29-205)||(5883078-5883252)
chr4 (147-215)||(19719208-19719276)
[»] chr3 (5 HSPs)
chr3 (29-214)||(30375877-30376059)
chr3 (147-196)||(30406136-30406185)
chr3 (147-227)||(44121369-44121450)
chr3 (29-77)||(25131802-25131850)
chr3 (150-191)||(4555754-4555795)
[»] chr7 (3 HSPs)
chr7 (147-213)||(33879817-33879883)
chr7 (147-215)||(8914678-8914746)
chr7 (152-200)||(9083628-9083676)
[»] scaffold0008 (2 HSPs)
scaffold0008 (156-197)||(42171-42212)
scaffold0008 (29-77)||(42047-42095)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 25096191 - 25095952
Alignment:
19 acaatggtccttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25096191 acaatggtccttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttc 25096092  T
119 cgtgttataaagcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatt 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25096091 cgtgttataaagcaaaatccgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatt 25095992  T
219 tatgttgaactactgatgtaaataattgctatatcctttg 258  Q
    ||||||||||||||||||||||||||||||||||||||||    
25095991 tatgttgaactactgatgtaaataattgctatatcctttg 25095952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 25154161 - 25153922
Alignment:
19 acaatggtccttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25154161 acaatggtccttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttc 25154062  T
119 cgtgttataaagcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatt 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25154061 cgtgttataaagcaaaatccgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatt 25153962  T
219 tatgttgaactactgatgtaaataattgctatatcctttg 258  Q
    ||||||||||||||||||||||||||||||||||||||||    
25153961 tatgttgaactactgatgtaaataattgctatatcctttg 25153922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 25098955 - 25098745
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 128  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||    
25098955 ttattttgaaggaaaggaatgatagacttttccaaaccaaagaaaactcatcttcacagcttttggagtacatcaggctacttacttttccgtgttataa 25098856  T
129 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaac 228  Q
    |||||||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
25098855 agcaaaatctgtaat---tttttattataagttttatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttctgttgaac 25098759  T
229 tactgatgtaaata 242  Q
    |||| |||||||||    
25098758 tactaatgtaaata 25098745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 25158045 - 25157835
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 128  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||    
25158045 ttattttgaaggaaaggaatgatagacttttccaaaccaaagaaaactcatcttcacagcttttggagtacatcaggctacttacttttccgtgttataa 25157946  T
129 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaac 228  Q
    |||||||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
25157945 agcaaaatctgtaat---tttttattataagttttatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttctgttgaac 25157849  T
229 tactgatgtaaata 242  Q
    |||| |||||||||    
25157848 tactaatgtaaata 25157835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 31250794 - 31250970
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 128  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||   |   ||||||| |||| |||| ||||| ||| ||||| ||||  ||||    
31250794 ttatatggaaggaaaggaacgaaagacttttccgaaccaaagaaaactcctttgttcagcttttggagaacattaggcttctttctttttcgtggcataa 31250893  T
129 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaat 208  Q
    |||||||| ||||   | ||   ||| ||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||    
31250894 agcaaaatttgta---acttcctattttaagtatcatgattggtgccataaccctttcttatgtttgggtatgggctaat 31250970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 176
Target Start/End: Original strand, 32200143 - 32200172
Alignment:
147 ttttcattataagtttcatgattggtgcca 176  Q
    ||||||||||||||||||||||||||||||    
32200143 ttttcattataagtttcatgattggtgcca 32200172  T

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Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 26857917 - 26857730
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 128  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||| |||| |||||||||||| |||||| ||| ||||||  ||||    
26857917 ttatttggaaggaaaggaacgataaactttttcgaaccaaagaaaactcaccttcgcaacttttggagtacatcagtctactttcttatccgtggcataa 26857818  T
129 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttattt 219  Q
    |||||||| ||||||   |||||||||||||||| ||||||||||| ||||||| || ||| |||||||||| ||||||||||||||||||    
26857817 agcaaaatttgtaat---ttttcattataagttttatgattggtgctagaacccgtttttaagtttgggtatgggctaatcattgttattt 26857730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 3330590 - 3330527
Alignment:
147 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatca 210  Q
    |||| ||||||||||||||||||||||||| ||| | || || |||||||||||||||||||||    
3330590 ttttaattataagtttcatgattggtgccaaaactcgtttttgtgtttgggtataggctaatca 3330527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 18001937 - 18002120
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 128  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||| ||||  ||  ||| ||| |||| || ||||||| ||| ||||| | ||  ||||    
18001937 ttatttggaaggaaatgaacgatagacttttctgaaccaaagaaagctcatgtcgtcagattttggagaacctcaggctcctttctttttcttggcataa 18002036  T
129 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 215  Q
    |||||||| ||    ||||||| ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
18002037 agcaaaatttgc---taatttttattataagtttcatgattggtgccagaacctgttcttatatttgggtataggctaatcattgtt 18002120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 10383237 - 10383411
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 128  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||| ||||| |   ||||  |||| |||||| ||| ||| ||| | |||| |||||    
10383237 ttatttgaaaggaaaggaatgctagacttttccgagccaaagaaaacacaccttctt-gcttctggagaacatcatgcttctttcttattcgtggtataa 10383335  T
129 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaa 207  Q
    ||| |||| ||||||| ||   |||||||||||||||||||||||||| ||||  |||| ||||||||| |||||||||    
10383336 agctaaatttgtaatttat---cattataagtttcatgattggtgccaaaacctgttctcatgtttgggaataggctaa 10383411  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 7635687 - 7635870
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 128  Q
    |||||||||||||||||||||| ||||| ||| |||| ||| | | ||||  ||| ||||||| |||| |||| ||||||||  |||||   ||  ||||    
7635687 ttatttggaaggaaaggaatgacagactcttcagaacaaaacagagctcatttcctcagcttttggagaacattaggctactctctttttattggcataa 7635786  T
129 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 215  Q
    |||||||| ||    || |||| |||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||    
7635787 agcaaaatgtgc---tagttttaattataagtttcatgattggtgtcagaactcgttcttgtgtttgggtataggctaatcattgtt 7635870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 50371716 - 50371648
Alignment:
147 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 215  Q
    |||| ||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||    
50371716 ttttaattataagtttcatgattggtgccataatccgttcttgtgtttgggtataggctaatcattgtt 50371648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 5883252 - 5883078
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaag-aaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttata 127  Q
    ||||||||||||||| || ||||||| |||||  || ||||  |||||||   ||| ||||||| |||| |||| ||||||||  |||||   ||  |||    
5883252 ttatttggaaggaaatgattgatagaattttcaaaaacaaaacaaaactcctttccccagcttttggagaacattaggctactctctttttattggcata 5883153  T
128 aagcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggct 205  Q
    ||||||||| ||    || |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
5883152 aagcaaaatttgc---tagttttaattataagttacatgattggtgccagaacccgttcttgtgtttgggtataggct 5883078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 19719208 - 19719276
Alignment:
147 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 215  Q
    |||| ||||||||||| |||||||||||| |||||  ||||| ||||||||||||| ||||||||||||    
19719208 ttttaattataagttttatgattggtgcccgaacctgttcttgtgtttgggtatagactaatcattgtt 19719276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 30376059 - 30375877
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 128  Q
    ||||||||||||||| |||||||||| |||| | ||||||| ||| |||   | | || |||| |||| |||| ||||||||  ||||| | ||  ||||    
30376059 ttatttggaaggaaatgaatgatagaatttttcaaaccaaacaaagctccttttctcaacttttggagaacattaggctactctctttttcatggcataa 30375960  T
129 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgt 214  Q
    |||||||| ||    || |||| |||||||||||  |||||||||||||||||| ||||| ||||||| |||||||||||||||||    
30375959 agcaaaatttgc---tagttttaattataagttttttgattggtgccagaacccgttcttgtgtttggatataggctaatcattgt 30375877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 30406185 - 30406136
Alignment:
147 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgg 196  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||    
30406185 ttttcattataagtttcatgattggtgccagaaccctttttcatgtttgg 30406136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 44121450 - 44121369
Alignment:
147 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt-atttatgttgaa 227  Q
    |||| ||| |||||||||||||| |||| ||||||  ||||||||||| ||||||| |||||||||||| |||| |||||||    
44121450 ttttaattttaagtttcatgattagtgctagaacctgttcttatgtttaggtatagtctaatcattgttcatttttgttgaa 44121369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 25131850 - 25131802
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactc 77  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||    
25131850 ttatttggaaggaaaggaacgacagacttttctgaaccaaagaaaactc 25131802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 4555754 - 4555795
Alignment:
150 tcattataagtttcatgattggtgccagaaccccttcttatg 191  Q
    |||||||| |||||||||||||||||| ||||| ||||||||    
4555754 tcattatatgtttcatgattggtgccataaccctttcttatg 4555795  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 33879883 - 33879817
Alignment:
147 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattg 213  Q
    |||| |||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||    
33879883 ttttaattataagtttcatgattggtggcagaatccgttcttgtgtttaggtataggctaatcattg 33879817  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 8914746 - 8914678
Alignment:
147 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 215  Q
    |||| ||||||||||| |||||||||| |||||| | ||||| |||||||||||||| |||||||||||    
8914746 ttttaattataagttttatgattggtgtcagaactcgttcttgtgtttgggtataggttaatcattgtt 8914678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 9083676 - 9083628
Alignment:
152 attataagtttcatgattggtgccagaaccccttcttatgtttgggtat 200  Q
    ||||||| ||||||||||||||||| |||||||| |  |||||||||||    
9083676 attataattttcatgattggtgccataaccccttttgttgtttgggtat 9083628  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 42171 - 42212
Alignment:
156 taagtttcatgattggtgccagaaccccttcttatgtttggg 197  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
42171 taagtttcatgattggtgtcagaaccctttcttatgtttggg 42212  T

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Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 42047 - 42095
Alignment:
29 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactc 77  Q
    |||||||||| |||| |||  ||||||||||||||| ||||||||||||    
42047 ttatttggaaagaaaagaacaatagacttttccgaagcaaagaaaactc 42095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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