View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_45 (Length: 263)
Name: NF17302_low_45
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 1353855 - 1354072
Alignment:
| Q |
28 |
ctttctagaatacactttagatttcgctttaggtttcaataagtgttgaattgctcttactaacattaactatgttagatttcgttttaggcttcgataa |
127 |
Q |
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| T |
1353855 |
ctttctagaatacactttagatttcgctttaggtttcaataagcattgaattgctcttactaacattaactatgttagatttcgttttagggttcgataa |
1353954 |
T |
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| Q |
128 |
atgttgaagatattttataatggatttgttaaacattttgtgatgagtggaactggataattgttcttctcccatctgtttttgttaattccatcaaagt |
227 |
Q |
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| T |
1353955 |
gtgttaaagatattttataatgggtatgttaaatattttgtgatgagtggaacttgataattgttcttctcccatctgtttttgttaatcccgtcaaagt |
1354054 |
T |
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| Q |
228 |
agtcgagcgtgagtctca |
245 |
Q |
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| T |
1354055 |
agtcgagcgtgagtctca |
1354072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 22842147 - 22842206
Alignment:
| Q |
183 |
gataattgttcttctcccatctgtttttgttaatt-ccatcaaagtagtcgagcgtgagt |
241 |
Q |
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| T |
22842147 |
gataattgttcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagt |
22842206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 9979738 - 9979685
Alignment:
| Q |
189 |
tgttcttctcccatctgtttttgttaattc-catcaaagtagtcgagcgtgagt |
241 |
Q |
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| T |
9979738 |
tgttcttctcccatctgtttttgttcattcatgtcaaaatagtcgagcgtgagt |
9979685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 37688820 - 37688848
Alignment:
| Q |
185 |
taattgttcttctcccatctgtttttgtt |
213 |
Q |
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| T |
37688820 |
taattgttcttctcccatctgtttttgtt |
37688848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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