View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_46 (Length: 261)
Name: NF17302_low_46
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 10103111 - 10102969
Alignment:
| Q |
14 |
agaagcaaagggtacataaagaagtttgttcattttaagaacaaattaatgaataatattacctcttggatagttggtaaaaattcttctgctggatgat |
113 |
Q |
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| T |
10103111 |
agaaccaaagggtacataaagaagtttgttcattttaagaacaaattaatgaataatattacctcttggattgttggtaaaaattcttctgctggatgat |
10103012 |
T |
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| Q |
114 |
aaagtacaacttcattaccctaaaatacattatgagacgttaa |
156 |
Q |
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| T |
10103011 |
aaagtacaacttcattaccctaaaatacattatgagacgttaa |
10102969 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 10102663 - 10102612
Alignment:
| Q |
160 |
ttatccttattgttatgtatgtctcaaacaagattgttctgataataagaga |
211 |
Q |
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| T |
10102663 |
ttattcttattgttatgtatgtctcaaacaagattgttatgataataagaga |
10102612 |
T |
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