View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_53 (Length: 239)
Name: NF17302_low_53
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 36685675 - 36685468
Alignment:
| Q |
18 |
cttttcaaataagaagggataatttgttcgcagtattcttgtgcatcggtatgttaatgacagttcagagttctgagactgatatgtaccgtttaaaata |
117 |
Q |
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| T |
36685675 |
cttttcaaataagaagggataatttgttcgcagtattcttgtgcatcggtatgttaatgacagttcagagttctgagactgatatgtaccgtttaaaata |
36685576 |
T |
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| Q |
118 |
cattaagaattcattggaagatccgtttaatgacaagagcatcgatttccatgaatcgttcaagggcggtcttattgttggttatgttttttcactctct |
217 |
Q |
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| T |
36685575 |
cattaagaattcattggaagatccgtttaatgacaagagcatcgatttccatgaatcgttcaagggcggtcttattgttggttatgttttttcactctct |
36685476 |
T |
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| Q |
218 |
tgttctgt |
225 |
Q |
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|||||||| |
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| T |
36685475 |
tgttctgt |
36685468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 36677883 - 36677796
Alignment:
| Q |
54 |
tcttgtgcatcggtatgttaatgacagttcagagttctgagactgatatgtaccgtttaaaatacattaagaattcattggaagatcc |
141 |
Q |
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| T |
36677883 |
tcttgtgcctcactatgttaatgactagtcagagtactgagactgatatcttctgtttaaaatccattaagaattccttggaagatcc |
36677796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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