View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17302_low_54 (Length: 239)

Name: NF17302_low_54
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17302_low_54
NF17302_low_54
[»] chr1 (12 HSPs)
chr1 (71-220)||(6406110-6406255)
chr1 (17-76)||(6411929-6411988)
chr1 (178-212)||(30385311-30385345)
chr1 (199-239)||(52042367-52042407)
chr1 (178-212)||(3485373-3485407)
chr1 (178-212)||(6402576-6402610)
chr1 (178-212)||(6766434-6766468)
chr1 (178-212)||(11641233-11641267)
chr1 (178-212)||(36757652-36757686)
chr1 (179-212)||(31444986-31445019)
chr1 (178-214)||(16689886-16689922)
chr1 (184-212)||(22575753-22575781)
[»] chr6 (13 HSPs)
chr6 (178-214)||(1260492-1260528)
chr6 (178-212)||(15337550-15337584)
chr6 (178-212)||(19240758-19240792)
chr6 (180-212)||(8101664-8101696)
chr6 (178-212)||(6563288-6563322)
chr6 (178-212)||(10298739-10298773)
chr6 (178-212)||(18668854-18668888)
chr6 (178-212)||(23158075-23158109)
chr6 (178-212)||(24624107-24624141)
chr6 (178-212)||(28477815-28477849)
chr6 (178-212)||(29693945-29693979)
chr6 (178-212)||(31869770-31869804)
chr6 (178-212)||(32414845-32414879)
[»] scaffold0595 (1 HSPs)
scaffold0595 (178-212)||(4010-4044)
[»] chr8 (12 HSPs)
chr8 (178-212)||(33700239-33700273)
chr8 (178-212)||(616845-616879)
chr8 (178-212)||(623238-623272)
chr8 (178-212)||(3370422-3370456)
chr8 (178-212)||(4270258-4270292)
chr8 (178-212)||(5878378-5878412)
chr8 (178-212)||(14237342-14237376)
chr8 (178-212)||(18020928-18020962)
chr8 (178-212)||(18044487-18044521)
chr8 (178-212)||(32998512-32998546)
chr8 (178-212)||(40494446-40494480)
chr8 (178-212)||(41263872-41263906)
[»] chr7 (22 HSPs)
chr7 (178-212)||(3785582-3785616)
chr7 (178-212)||(27045574-27045608)
chr7 (178-212)||(38767225-38767259)
chr7 (173-212)||(37467473-37467512)
chr7 (174-213)||(44594684-44594723)
chr7 (182-212)||(4131669-4131699)
chr7 (178-212)||(7169188-7169222)
chr7 (178-212)||(8683880-8683914)
chr7 (178-212)||(20885165-20885199)
chr7 (178-212)||(28061681-28061715)
chr7 (178-212)||(36623370-36623404)
chr7 (178-212)||(38852013-38852047)
chr7 (178-212)||(39130092-39130126)
chr7 (178-212)||(40090084-40090118)
chr7 (178-212)||(42662248-42662282)
chr7 (178-212)||(42890509-42890543)
chr7 (178-212)||(46103536-46103570)
chr7 (178-212)||(47156089-47156123)
chr7 (178-212)||(48602498-48602532)
chr7 (178-212)||(49110636-49110670)
chr7 (180-212)||(6174900-6174932)
chr7 (168-212)||(7457888-7457932)
[»] chr5 (9 HSPs)
chr5 (178-212)||(11761128-11761162)
chr5 (178-212)||(978139-978173)
chr5 (178-212)||(9502793-9502827)
chr5 (182-212)||(18998753-18998783)
chr5 (178-212)||(24992304-24992338)
chr5 (178-212)||(32017275-32017309)
chr5 (178-212)||(33587635-33587669)
chr5 (178-212)||(36240097-36240131)
chr5 (178-212)||(37495672-37495706)
[»] chr4 (21 HSPs)
chr4 (178-212)||(2760893-2760927)
chr4 (178-212)||(7614677-7614711)
chr4 (178-212)||(29051746-29051780)
chr4 (178-212)||(2571048-2571082)
chr4 (178-212)||(3037042-3037076)
chr4 (178-212)||(5119087-5119121)
chr4 (178-212)||(14144623-14144657)
chr4 (178-212)||(19903816-19903850)
chr4 (178-208)||(20875417-20875447)
chr4 (178-212)||(26125770-26125804)
chr4 (178-212)||(29830405-29830439)
chr4 (178-212)||(35381060-35381094)
chr4 (178-212)||(38416816-38416850)
chr4 (178-212)||(43967785-43967819)
chr4 (178-212)||(44232243-44232277)
chr4 (178-212)||(47386452-47386486)
chr4 (178-212)||(50205805-50205839)
chr4 (178-212)||(54330856-54330890)
chr4 (178-212)||(55209740-55209774)
chr4 (178-212)||(56297868-56297902)
chr4 (178-206)||(50685370-50685398)
[»] chr2 (16 HSPs)
chr2 (178-212)||(6223128-6223162)
chr2 (178-212)||(11931753-11931787)
chr2 (178-212)||(19262742-19262776)
chr2 (178-212)||(24252022-24252056)
chr2 (178-212)||(43444706-43444740)
chr2 (179-212)||(38839136-38839169)
chr2 (178-212)||(5405058-5405092)
chr2 (178-212)||(7608111-7608145)
chr2 (178-212)||(8042188-8042222)
chr2 (178-212)||(9006950-9006984)
chr2 (178-212)||(9172312-9172346)
chr2 (178-212)||(19141232-19141266)
chr2 (178-212)||(38292014-38292048)
chr2 (178-212)||(42133814-42133848)
chr2 (180-209)||(31904049-31904078)
chr2 (178-214)||(7666152-7666188)
[»] scaffold0225 (1 HSPs)
scaffold0225 (178-212)||(8999-9033)
[»] scaffold0099 (1 HSPs)
scaffold0099 (178-212)||(28818-28852)
[»] scaffold0029 (1 HSPs)
scaffold0029 (178-212)||(138196-138230)
[»] chr3 (15 HSPs)
chr3 (178-212)||(3017853-3017887)
chr3 (178-212)||(13499501-13499535)
chr3 (178-212)||(14412261-14412295)
chr3 (178-212)||(15332972-15333006)
chr3 (178-212)||(15568101-15568135)
chr3 (178-212)||(27334897-27334931)
chr3 (178-212)||(27813454-27813488)
chr3 (178-212)||(30213866-30213900)
chr3 (178-212)||(33415861-33415895)
chr3 (178-212)||(38137886-38137920)
chr3 (178-212)||(39866307-39866341)
chr3 (182-212)||(41252929-41252959)
chr3 (178-212)||(41751576-41751610)
chr3 (178-212)||(42490362-42490396)
chr3 (178-212)||(42761649-42761683)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 6406255 - 6406110
Alignment:
Q  71 gtttcccacacaccatctcaaccctcctccaaccactacatgtgaagcatgaatactacccgagaaatatataaatacaatgtgcacagttctcataact 170  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6406255 gtttcccacacactatctcaaccctcctccaactactacatgtgaagcatcaatactacccgagaaatatataaatacaatgtgcacagttctcataact 6406156  T
Q  171 tagttagtttgaccatattttttaactaatatataaatacaatttaaaat 220  Q
    |    |||||||| ||||||||||||||||||||||||||||||||||||    
T  6406155 t----agtttgactatattttttaactaatatataaatacaatttaaaat 6406110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 6411988 - 6411929
Alignment:
Q  17 ataactgtccttctcccttgaccaagcatccttccacacactaatcttcctcccgtttcc 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6411988 ataactgtccttctcccttgaccaagcatccttccacacactaatcttcctccagtttcc 6411929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 30385345 - 30385311
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  30385345 tttgaccatattttttaactaatatataaatacaa 30385311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 52042407 - 52042367
Alignment:
Q  199 atatataaatacaatttaaaattttgtcgaatgattcattt 239  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  52042407 atatataaatacaatttataaatttgtcgaatgattcattt 52042367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 3485407 - 3485373
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  3485407 tttgatcatattttttaactaatatataaatacaa 3485373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 6402610 - 6402576
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  6402610 tttgaccatactttttaactaatatataaatacaa 6402576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 6766434 - 6766468
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  6766434 tttgaccatactttttaactaatatataaatacaa 6766468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 11641267 - 11641233
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  11641267 tttgaccatactttttaactaatatataaatacaa 11641233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 36757686 - 36757652
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  36757686 tttgaccatactttttaactaatatataaatacaa 36757652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 31444986 - 31445019
Alignment:
Q  179 ttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||||||||| ||||    
T  31444986 ttgaccatattttttaactaatatataaacacaa 31445019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 16689886 - 16689922
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaatt 214  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  16689886 tttgatcatattttctaactaatatataaatacaatt 16689922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 22575781 - 22575753
Alignment:
Q  184 catattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||    
T  22575781 catattttttaactaatatataaatacaa 22575753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 1260492 - 1260528
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaatt 214  Q
    |||||||||||||||||||||||||||||||||||||    
T  1260492 tttgaccatattttttaactaatatataaatacaatt 1260528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 15337550 - 15337584
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  15337550 tttgaccatattttttaactaatatataaatacaa 15337584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 19240792 - 19240758
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  19240792 tttgaccatattttttaactaatatataaatacaa 19240758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 8101664 - 8101696
Alignment:
Q  180 tgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||    
T  8101664 tgaccatattttttaactaatatataaatacaa 8101696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 6563288 - 6563322
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  6563288 tttgaccatactttttaactaatatataaatacaa 6563322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 10298773 - 10298739
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||| ||||||||||||||||||    
T  10298773 tttgaccatattttttcactaatatataaatacaa 10298739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 18668888 - 18668854
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  18668888 tttgaccatattttttaactaatgtataaatacaa 18668854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 23158109 - 23158075
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||| ||||||||||||||||||||||||||    
T  23158109 tttgaccacattttttaactaatatataaatacaa 23158075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 24624141 - 24624107
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  24624141 tttgaccatactttttaactaatatataaatacaa 24624107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 28477815 - 28477849
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  28477815 tttgaccataatttttaactaatatataaatacaa 28477849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 29693945 - 29693979
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  29693945 tttgaccataatttttaactaatatataaatacaa 29693979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 31869770 - 31869804
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||| |||||||||||||||||||||||||    
T  31869770 tttgaccattttttttaactaatatataaatacaa 31869804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 32414879 - 32414845
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  32414879 tttgaccatactttttaactaatatataaatacaa 32414845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 4010 - 4044
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  4010 tttgaccatattttttaactaatatataaatacaa 4044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 33700273 - 33700239
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  33700273 tttgaccatattttttaactaatatataaatacaa 33700239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 616845 - 616879
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  616845 tttgaccatactttttaactaatatataaatacaa 616879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 623238 - 623272
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  623238 tttgaccatactttttaactaatatataaatacaa 623272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 3370456 - 3370422
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||| ||||||||||||||||    
T  3370456 tttgaccatattttttaattaatatataaatacaa 3370422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 4270292 - 4270258
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  4270292 tttgaccatattttttaactaatgtataaatacaa 4270258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 5878378 - 5878412
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  5878378 tttgaccatattttttaactaatgtataaatacaa 5878412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 14237342 - 14237376
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  14237342 tttgaccatattttttaactaatgtataaatacaa 14237376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 18020928 - 18020962
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||| ||||||||    
T  18020928 tttgaccatattttttaactaatatacaaatacaa 18020962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 18044487 - 18044521
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  18044487 tttgaccatattttttaactaatgtataaatacaa 18044521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 32998512 - 32998546
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  32998512 tttgaccatattttttaactaatgtataaatacaa 32998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 40494446 - 40494480
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  40494446 tttgaccatactttttaactaatatataaatacaa 40494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 41263872 - 41263906
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  41263872 tttgaccatattttttaactaatgtataaatacaa 41263906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 3785582 - 3785616
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  3785582 tttgaccatattttttaactaatatataaatacaa 3785616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 27045608 - 27045574
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  27045608 tttgaccatattttttaactaatatataaatacaa 27045574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 38767259 - 38767225
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  38767259 tttgaccatattttttaactaatatataaatacaa 38767225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 37467512 - 37467473
Alignment:
Q  173 gttagtttgaccatattttttaactaatatataaatacaa 212  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  37467512 gttactttaaccatattttttaactaatatataaatacaa 37467473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 44594723 - 44594684
Alignment:
Q  174 ttagtttgaccatattttttaactaatatataaatacaat 213  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  44594723 ttagtttaatcatattttttaactaatatataaatacaat 44594684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 4131699 - 4131669
Alignment:
Q  182 accatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||    
T  4131699 accatattttttaactaatatataaatacaa 4131669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 7169188 - 7169222
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||| ||||||||||||||||||||||||||||    
T  7169188 tttgactatattttttaactaatatataaatacaa 7169222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 8683880 - 8683914
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  8683880 tttgaccatactttttaactaatatataaatacaa 8683914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 20885165 - 20885199
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  20885165 tttgaccatattttttaactaatgtataaatacaa 20885199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 28061715 - 28061681
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  28061715 tttgaccatactttttaactaatatataaatacaa 28061681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 36623370 - 36623404
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  36623370 tttgaccatactttttaactaatatataaatacaa 36623404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 38852047 - 38852013
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  38852047 tttgaccatactttttaactaatatataaatacaa 38852013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 39130126 - 39130092
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  39130126 tttgaccatattttttaactaatgtataaatacaa 39130092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 40090118 - 40090084
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  40090118 tttgaccatactttttaactaatatataaatacaa 40090084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 42662248 - 42662282
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  42662248 tttgaccatactttttaactaatatataaatacaa 42662282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 42890543 - 42890509
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  42890543 tttgaccatactttttaactaatatataaatacaa 42890509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 46103570 - 46103536
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  46103570 tttgaccatactttttaactaatatataaatacaa 46103536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 47156089 - 47156123
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  47156089 tttgaccatactttttaactaatatataaatacaa 47156123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 48602498 - 48602532
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  48602498 tttgaccatactttttaactaatatataaatacaa 48602532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 49110670 - 49110636
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||||||| |||||||    
T  49110670 tttgaccatattttttaactaatatattaatacaa 49110636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 6174900 - 6174932
Alignment:
Q  180 tgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||| |||||||||||    
T  6174900 tgaccatattttttaactaatgtataaatacaa 6174932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 7457932 - 7457888
Alignment:
Q  168 acttagttagtttgaccatattttttaactaatatataaatacaa 212  Q
    ||||| ||| |||||||||| |||||||||||| |||||||||||    
T  7457932 acttacttactttgaccatactttttaactaatgtataaatacaa 7457888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 11761128 - 11761162
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  11761128 tttgaccatattttttaactaatatataaatacaa 11761162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 978139 - 978173
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  978139 tttgaccatactttttaactaatatataaatacaa 978173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 9502827 - 9502793
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  9502827 tttgaccatactttttaactaatatataaatacaa 9502793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Original strand, 18998753 - 18998783
Alignment:
Q  182 accatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||    
T  18998753 accatattttttaactaatatataaatacaa 18998783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 24992338 - 24992304
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  24992338 tttgaccatattttttaactaatttataaatacaa 24992304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 32017275 - 32017309
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  32017275 tttgatcatattttttaactaatatataaatacaa 32017309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 33587669 - 33587635
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  33587669 tttgaccatattttttaactaatctataaatacaa 33587635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 36240131 - 36240097
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||| |||||||||||||||||||    
T  36240131 tttgaccatatttttaaactaatatataaatacaa 36240097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 37495672 - 37495706
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  37495672 tttgatcatattttttaactaatatataaatacaa 37495706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 2760927 - 2760893
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  2760927 tttgaccatattttttaactaatatataaatacaa 2760893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 7614677 - 7614711
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  7614677 tttgaccatattttttaactaatatataaatacaa 7614711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 29051746 - 29051780
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  29051746 tttgaccatattttttaactaatatataaatacaa 29051780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 2571082 - 2571048
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||| ||||||||||||||||||||||||||||    
T  2571082 tttgactatattttttaactaatatataaatacaa 2571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 3037042 - 3037076
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  3037042 tttgaccatactttttaactaatatataaatacaa 3037076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 5119121 - 5119087
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||| ||||||||||||||||    
T  5119121 tttgaccatattttttaattaatatataaatacaa 5119087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 14144657 - 14144623
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||| ||||||||||||||||||||||||||    
T  14144657 tttgaccacattttttaactaatatataaatacaa 14144623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 19903850 - 19903816
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||| |||||||||||||||||||||||    
T  19903850 tttgaccatatattttaactaatatataaatacaa 19903816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 208
Target Start/End: Complemental strand, 20875447 - 20875417
Alignment:
Q  178 tttgaccatattttttaactaatatataaat 208  Q
    |||||||||||||||||||||||||||||||    
T  20875447 tttgaccatattttttaactaatatataaat 20875417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 26125770 - 26125804
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  26125770 tttgaccatattttttaactaatgtataaatacaa 26125804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 29830405 - 29830439
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  29830405 tttgaccatactttttaactaatatataaatacaa 29830439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 35381094 - 35381060
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  35381094 tttgaccatactttttaactaatatataaatacaa 35381060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 38416850 - 38416816
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  38416850 tttgaccatactttttaactaatatataaatacaa 38416816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 43967785 - 43967819
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  43967785 tttgaccatactttttaactaatatataaatacaa 43967819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 44232277 - 44232243
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  44232277 tttgaccatactttttaactaatatataaatacaa 44232243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 47386486 - 47386452
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  47386486 tttgaccatattttttaactaatgtataaatacaa 47386452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 50205805 - 50205839
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  50205805 tttgaccatactttttaactaatatataaatacaa 50205839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 54330890 - 54330856
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  54330890 tttgaccatactttttaactaatatataaatacaa 54330856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 55209774 - 55209740
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  55209774 tttgaccatactttttaactaatatataaatacaa 55209740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 56297902 - 56297868
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||| |||||||||||||||||||||    
T  56297902 tttgaccatatttattaactaatatataaatacaa 56297868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 50685398 - 50685370
Alignment:
Q  178 tttgaccatattttttaactaatatataa 206  Q
    |||||||||||||||||||||||||||||    
T  50685398 tttgaccatattttttaactaatatataa 50685370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 6223128 - 6223162
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  6223128 tttgaccatattttttaactaatatataaatacaa 6223162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 11931753 - 11931787
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  11931753 tttgaccatattttttaactaatatataaatacaa 11931787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 19262742 - 19262776
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  19262742 tttgaccatattttttaactaatatataaatacaa 19262776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 24252022 - 24252056
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  24252022 tttgaccatattttttaactaatatataaatacaa 24252056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 43444740 - 43444706
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||||||    
T  43444740 tttgaccatattttttaactaatatataaatacaa 43444706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 38839136 - 38839169
Alignment:
Q  179 ttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||||||||||||||    
T  38839136 ttgaccatattttttaactaatatataaatacaa 38839169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 5405058 - 5405092
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  5405058 tttgaccatactttttaactaatatataaatacaa 5405092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 7608111 - 7608145
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  7608111 tttgaccatactttttaactaatatataaatacaa 7608145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 8042222 - 8042188
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  8042222 tttgaccatactttttaactaatatataaatacaa 8042188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 9006984 - 9006950
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  9006984 tttgaccatattttttaactaatttataaatacaa 9006950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 9172346 - 9172312
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  9172346 tttgaccatattttttaactaatgtataaatacaa 9172312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 19141266 - 19141232
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  19141266 tttgaccatactttttaactaatatataaatacaa 19141232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 38292014 - 38292048
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||| |||||||||||||    
T  38292014 tttgaccatattttttaactagtatataaatacaa 38292048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 42133814 - 42133848
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  42133814 tttgatcatattttttaactaatatataaatacaa 42133848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 31904078 - 31904049
Alignment:
Q  180 tgaccatattttttaactaatatataaata 209  Q
    ||||||||||||||||||||||||||||||    
T  31904078 tgaccatattttttaactaatatataaata 31904049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 7666152 - 7666188
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaatt 214  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  7666152 tttgaccatatattttatctaatatataaatacaatt 7666188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 9033 - 8999
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||| ||||||||||||||||||||||||||    
T  9033 tttgaccacattttttaactaatatataaatacaa 8999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 28852 - 28818
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  28852 tttgaccatattttttaactaatttataaatacaa 28818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 138230 - 138196
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||| ||||||||||||||||||||||||||    
T  138230 tttgaccacattttttaactaatatataaatacaa 138196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 3017853 - 3017887
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||| |||||||||||||    
T  3017853 tttgaccatattttttaactattatataaatacaa 3017887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 13499535 - 13499501
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  13499535 tttgaccatactttttaactaatatataaatacaa 13499501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 14412295 - 14412261
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||| |||||||||||||||||||||||||||    
T  14412295 tttgaccgtattttttaactaatatataaatacaa 14412261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 15333006 - 15332972
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||| ||||||||||||||||||||||||||    
T  15333006 tttgaccaaattttttaactaatatataaatacaa 15332972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 15568135 - 15568101
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  15568135 tttgatcatattttttaactaatatataaatacaa 15568101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 27334931 - 27334897
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  27334931 tttgaccatactttttaactaatatataaatacaa 27334897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 27813488 - 27813454
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||| ||||||||||||||||||||||||||||    
T  27813488 tttgactatattttttaactaatatataaatacaa 27813454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 30213866 - 30213900
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  30213866 tttgaccatactttttaactaatatataaatacaa 30213900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 33415861 - 33415895
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  33415861 tttgaccatactttttaactaatatataaatacaa 33415895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 38137886 - 38137920
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  38137886 tttgaccatattttttaactaatgtataaatacaa 38137920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 39866341 - 39866307
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  39866341 tttgaccatactttttaactaatatataaatacaa 39866307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 41252959 - 41252929
Alignment:
Q  182 accatattttttaactaatatataaatacaa 212  Q
    |||||||||||||||||||||||||||||||    
T  41252959 accatattttttaactaatatataaatacaa 41252929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 41751610 - 41751576
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  41751610 tttgatcatattttttaactaatatataaatacaa 41751576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 42490396 - 42490362
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  42490396 tttgaccatactttttaactaatatataaatacaa 42490362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 42761683 - 42761649
Alignment:
Q  178 tttgaccatattttttaactaatatataaatacaa 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  42761683 tttgaccatactttttaactaatatataaatacaa 42761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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