View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_59 (Length: 227)
Name: NF17302_low_59
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 23576458 - 23576266
Alignment:
| Q |
16 |
tcattaacatgccaaacaatgcactagaagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaag |
115 |
Q |
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| T |
23576458 |
tcataaacattccaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaag |
23576359 |
T |
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| Q |
116 |
attccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaat |
208 |
Q |
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| T |
23576358 |
attccagcaggcttaccggcaagctgttgtgttttccatagtccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaat |
23576266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 23590728 - 23590573
Alignment:
| Q |
53 |
tcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttcc |
152 |
Q |
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| T |
23590728 |
tcgagtaaaggctcttacgctgtagtctcttgtccaccgccttgggaactagtgttgtagaagattctggcaggcttccctacaagctgttgtgttttcc |
23590629 |
T |
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| Q |
153 |
atagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaat |
208 |
Q |
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| T |
23590628 |
aaagaccaccagttgcatctagaaaggctttaaattgagcagccatcattccaaat |
23590573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 43 - 208
Target Start/End: Complemental strand, 23596001 - 23595836
Alignment:
| Q |
43 |
aagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgt |
142 |
Q |
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| T |
23596001 |
aagaatatgatccactaaaggctcttccgttgtagtctcttggccatcgccttgggaactgatgctgtagaagattccggcaggcttccctgcaagctgt |
23595902 |
T |
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| Q |
143 |
tgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaat |
208 |
Q |
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| T |
23595901 |
tgcgttttccagagaccaccaattgcatctataaaggctttaaactaagcagccatcattccaaat |
23595836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 43 - 208
Target Start/End: Complemental strand, 23604923 - 23604758
Alignment:
| Q |
43 |
aagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgt |
142 |
Q |
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| T |
23604923 |
aagaatatgatccactaaaggctcttccgttgtagtctcttggccatcgccttgggaactgatgctgtagaagattccggcaggcttccctgcaagctgt |
23604824 |
T |
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| Q |
143 |
tgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaat |
208 |
Q |
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| T |
23604823 |
tgcgttttccagagaccaccaattgcatctataaaggctttaaactaagcagccatcattccaaat |
23604758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 23564476 - 23564535
Alignment:
| Q |
119 |
ccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaag |
178 |
Q |
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| T |
23564476 |
ccggcaggcttccctgcaagctgtcctgttttccatagacctacagtttcttctagaaag |
23564535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 34339765 - 34339620
Alignment:
| Q |
63 |
gctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccacc |
162 |
Q |
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| T |
34339765 |
gctcttacgctgtagtctcttgtcctccaccttgagaaccagtgctgtagaagattccggcaggcttgcctgcaagcgattgtgctttccacaaaccacc |
34339666 |
T |
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| Q |
163 |
agttgcatctagaaaggctttaaactgagcagccatcattccaaat |
208 |
Q |
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| T |
34339665 |
agtagcatcaagaaaagctttgaattgagcagccatcattccaaat |
34339620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 36461849 - 36461714
Alignment:
| Q |
73 |
tgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatct |
172 |
Q |
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| T |
36461849 |
tgtagtctcttgtcctcctccctgagaaccagtgctgtaaaagattcctgcaggctttcctgcaagtgcctgagtacgccataggccaccagttgcatcc |
36461750 |
T |
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| Q |
173 |
agaaaggctttaaactgagcagccatcattccaaat |
208 |
Q |
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| T |
36461749 |
aagaatgctttaaactgagcagccatcattccaaat |
36461714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 36455400 - 36455343
Alignment:
| Q |
151 |
ccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaat |
208 |
Q |
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| T |
36455400 |
ccataggccaccagttgcatccaagaatgctttaaactgagcagccatcattccaaat |
36455343 |
T |
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