View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_6 (Length: 629)
Name: NF17302_low_6
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 11816813 - 11816949
Alignment:
| Q |
140 |
aaaatttaattcatttaattactttcgattacattttaacttcatctaattattggtttagtttgacgactatcttctcatatagaaatttaaacagtta |
239 |
Q |
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| T |
11816813 |
aaaatttaattcatttaattactttcgattacattttaattttatctaattattggtttagtttgatgactatcttctcatacagaaatttaaacggtta |
11816912 |
T |
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| Q |
240 |
tcatgccaaacgcaacgattaatgcaagatagaaatg |
276 |
Q |
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| T |
11816913 |
tcatggcaaacgcaaaaatcaatgtaatatagaaatg |
11816949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 11815741 - 11815859
Alignment:
| Q |
30 |
ctgcttttgttataaaatttgtttcaaatgttatgaaatta--actcgaagtaatttatgttgtatttatttgatttgatttcaatttagactctaatta |
127 |
Q |
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| T |
11815741 |
ctgcttttgttataaaatttgtttcaaatgttatg-aattagtactcgaactaatttatgttgtatttatttgatttga-ttcaatttagactctaatta |
11815838 |
T |
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| Q |
128 |
gaaacaacaccaaaaatttaa |
148 |
Q |
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| T |
11815839 |
gatacaacaccaaaaatttaa |
11815859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 11817513 - 11817579
Alignment:
| Q |
268 |
atagaaatggtttttgaacccaaacatttt-actgtcaaattgaatggtgtcgtttattttgtatgt |
333 |
Q |
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| T |
11817513 |
atagaaatgattgttgaacaccaacatttttaatgtaaaattgaatggtgtcgtttattttgtatgt |
11817579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 497 - 580
Target Start/End: Original strand, 32919558 - 32919641
Alignment:
| Q |
497 |
ttggatgtaaaaatgtaagatgaactatgaagaagtacactgtacacagtacacacaccaacacacgagttaagcgagggcaag |
580 |
Q |
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| T |
32919558 |
ttggatgtaaaaatgtaagatgaactatgaagaagtacactgtacacagtacacacaccgacacacgagttaagcgagggcaag |
32919641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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