View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_65 (Length: 205)
Name: NF17302_low_65
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 3701139 - 3700967
Alignment:
| Q |
15 |
agcataggtatcaatcagacacattttgtattatatacagaatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctg |
114 |
Q |
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| T |
3701139 |
agcataggtatcaatcagacacattttgtattatatacagaatatcctctgaagttggtatcgactcatccgttgttgattgcaatacatacggactctg |
3701040 |
T |
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| Q |
115 |
gtgtttaatgtttctactagcttggaaaggtaaggatcttcttgaatccttatttatttggaatattccttta |
187 |
Q |
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| T |
3701039 |
gtgtttaatgtttctactagcttggaaaggtaaggatcttcttgaatccttatttatttggaatattccttta |
3700967 |
T |
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Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 6602406 - 6602561
Alignment:
| Q |
15 |
agcataggtatcaatcagacacattttgtattatatacagaatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctg |
114 |
Q |
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||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602406 |
agcataggtatcaattagacacattttgtattgtataca-aatatcctctgaagtcagtatcgactcatccgttgttgattgcaatacatacggactctg |
6602504 |
T |
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| Q |
115 |
gtgtttaatgtttctactagcttggaaaggtaaggatcttcttgaatccttatttat |
171 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
6602505 |
gtgtttaatgtttctattagcttggaaaggtaaatatcttcttgaatccttatttat |
6602561 |
T |
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