View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17302_low_8 (Length: 555)
Name: NF17302_low_8
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17302_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 5 - 357
Target Start/End: Complemental strand, 5688506 - 5688155
Alignment:
| Q |
5 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattgcaaagctgttaaatcttctaatgaggtttctagttttctgta |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5688506 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattgcaaagctgttaa-tcttctaatgaggtttctagttttctgta |
5688408 |
T |
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| Q |
105 |
taatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688407 |
taatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatg |
5688308 |
T |
|
| Q |
205 |
ggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaagttttctaaaataagcacaacat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688307 |
ggttacattattgtaaaataatggatgaaaaagttttgagcactcatcagctgtgcacataaaaaggaatgacaaaagttttctaaaataagcacaacat |
5688208 |
T |
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| Q |
305 |
ttctaatcaaggctgctcctcaaatctgttttgcatattaatatccccataaa |
357 |
Q |
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| T |
5688207 |
ttctaatcaaggctgctcctcaaacctgttttgcatattaatatccccataaa |
5688155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 5178574 - 5178768
Alignment:
| Q |
85 |
gaggtttctagttttctgtataatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
184 |
Q |
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| T |
5178574 |
gaggtttctagttttctgtttaatgtaataattagttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
5178673 |
T |
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| Q |
185 |
ttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaa |
281 |
Q |
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| T |
5178674 |
ttgtaaa--atgtgtttgtgggttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
5178768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 5280389 - 5280583
Alignment:
| Q |
85 |
gaggtttctagttttctgtataatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
184 |
Q |
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||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280389 |
gaggtttctagttttctgtttaatgtaataattggttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
5280488 |
T |
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| Q |
185 |
ttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaa |
281 |
Q |
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| T |
5280489 |
ttgtaaa--atgtgtttgtggtttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
5280583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 458 - 538
Target Start/End: Complemental strand, 5688133 - 5688053
Alignment:
| Q |
458 |
aaagtagatgcgacaatgattaaaatattgaaagtattactatatacactgtttgtaacacaggaaactttaattcatcaa |
538 |
Q |
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| T |
5688133 |
aaagtagatgcgacaatgattaaaatattgaaagtattactatatacactgtttgtaacgcagtaaactttaattcatcaa |
5688053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 5125955 - 5125807
Alignment:
| Q |
123 |
tgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatgggttacattattgtaaaa |
222 |
Q |
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|||||| || |||||||||||||| |||||| | ||||| |||| |||||||||||||||| ||| |||||| ||| | |||||||| ||||||||| |
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| T |
5125955 |
tgttacctattgtgtgcctttggtttatttttattttgttatgcttaacaaattccattgtttcataacatatgtatttgttggttacatcattgtaaaa |
5125856 |
T |
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| Q |
223 |
taatggatgaaaaagttttgagcattcattagcggtgcacataaaaagg |
271 |
Q |
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| T |
5125855 |
tcatggatgaaaaagttttgaacactcattaccagtgcccataaaaagg |
5125807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 5178369 - 5178425
Alignment:
| Q |
5 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattg |
62 |
Q |
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|||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
5178369 |
taatactctggcttctgaaacat-aggttttggggaaggtaaagcttcagcttgattg |
5178425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 5280183 - 5280239
Alignment:
| Q |
5 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattg |
62 |
Q |
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|||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
5280183 |
taatactctggcttctgaaacat-aggttttggggaaggtaaagcttcagcttgattg |
5280239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 486
Target Start/End: Complemental strand, 5125721 - 5125603
Alignment:
| Q |
368 |
aaaatcttgtgcaattaatagcaaaagtgtcggcagaagttacaaacataactatctc-aggaaatattaatagctctttgaataaagtaga-aagtaga |
465 |
Q |
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|||||||||||||| || || |||||||| |||||||||||| |||||| ||||||| ||||||||| ||| |||| | || ||||||||| |||||| |
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| T |
5125721 |
aaaatcttgtgcaagtatcagtaaaagtgt-ggcagaagttactaacatatctatctcaaggaaatatgaattgctcctagagtaaagtagactagtaga |
5125623 |
T |
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| Q |
466 |
tgcgacaatgattaaaatatt |
486 |
Q |
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| T |
5125622 |
tgtgacaatga-taaaatatt |
5125603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 477
Target Start/End: Original strand, 5280592 - 5280676
Alignment:
| Q |
400 |
gcagaagttacaaacataactatctca-ggaaatattaatagctcttt-gaataaagtaga-----aagtagatgcgacaatgat |
477 |
Q |
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||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
5280592 |
gcagaagttactaacatatctatctcaaggaaatattaatagctcttttgaataaagtatactagtaagtagatgcgacaatgat |
5280676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 5072453 - 5072410
Alignment:
| Q |
137 |
tgcctttggtgcatttttctgctgttaggctttacaaattccat |
180 |
Q |
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| T |
5072453 |
tgcctttggttcatttttcttctgttaggctttacaaattccat |
5072410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 477
Target Start/End: Original strand, 5178777 - 5178862
Alignment:
| Q |
400 |
gcagaagttacaaacataactatctca-ggaaat-attaatagctcttt-gaataaagtaga-----aagtagatgcgacaatgat |
477 |
Q |
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||||||||||| |||||| |||||||| |||||| |||||||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
5178777 |
gcagaagttactaacatatctatctcaaggaaattattaatagctcttttgaataaagtatactagtaagtagatgcgacaatgat |
5178862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 22054073 - 22054171
Alignment:
| Q |
203 |
tgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaagttttctaaaataagcacaac |
302 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || ||||| ||||| ||| ||||||||||||||| ||||||||| |
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| T |
22054073 |
tgggttacattattgtaaaatcatggatgataaagttttgaacattcattagcagt--acatataaaggcatggtaaaagttttctaaaacaagcacaac |
22054170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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