View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17302_low_9 (Length: 539)

Name: NF17302_low_9
Description: NF17302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17302_low_9
NF17302_low_9
[»] chr1 (10 HSPs)
chr1 (47-522)||(16101322-16101798)
chr1 (64-522)||(14654847-14655306)
chr1 (400-522)||(16104778-16104900)
chr1 (401-534)||(19656889-19657022)
chr1 (401-522)||(14650847-14650969)
chr1 (401-522)||(14660638-14660760)
chr1 (401-522)||(17478215-17478336)
chr1 (401-515)||(29287704-29287817)
chr1 (401-469)||(17652807-17652875)
chr1 (401-472)||(47050059-47050130)
[»] chr5 (6 HSPs)
chr5 (78-522)||(5518656-5519096)
chr5 (38-240)||(38979104-38979302)
chr5 (249-363)||(38978534-38978649)
chr5 (401-509)||(42786077-42786185)
chr5 (399-522)||(27197778-27197902)
chr5 (403-521)||(15599416-15599535)
[»] scaffold0016 (1 HSPs)
scaffold0016 (85-418)||(76660-76992)
[»] chr3 (8 HSPs)
chr3 (385-517)||(7688409-7688541)
chr3 (401-522)||(5705065-5705186)
chr3 (401-522)||(28104392-28104514)
chr3 (401-522)||(28058009-28058131)
chr3 (401-522)||(28068434-28068556)
chr3 (16-100)||(7685246-7685331)
chr3 (401-507)||(19435605-19435710)
chr3 (423-471)||(17954288-17954336)
[»] chr6 (13 HSPs)
chr6 (257-413)||(27684718-27684874)
chr6 (399-522)||(33063689-33063812)
chr6 (413-523)||(30130915-30131025)
chr6 (401-522)||(27527824-27527946)
chr6 (401-535)||(33056197-33056334)
chr6 (410-515)||(15969961-15970066)
chr6 (401-506)||(28041304-28041408)
chr6 (401-469)||(22014634-22014702)
chr6 (404-521)||(6952786-6952903)
chr6 (400-472)||(25477664-25477735)
chr6 (295-346)||(16692837-16692888)
chr6 (423-471)||(14011684-14011732)
chr6 (84-116)||(31394015-31394047)
[»] chr2 (10 HSPs)
chr2 (401-522)||(10416520-10416641)
chr2 (401-534)||(4698464-4698597)
chr2 (313-413)||(9310540-9310639)
chr2 (400-509)||(808176-808285)
chr2 (401-507)||(2588428-2588533)
chr2 (79-317)||(9305879-9306115)
chr2 (401-469)||(44324742-44324810)
chr2 (423-471)||(45333308-45333356)
chr2 (379-413)||(20702588-20702622)
chr2 (396-472)||(10481980-10482055)
[»] chr7 (3 HSPs)
chr7 (400-522)||(28804133-28804255)
chr7 (390-522)||(26525371-26525503)
chr7 (423-471)||(36263730-36263778)
[»] chr4 (5 HSPs)
chr4 (400-518)||(5358102-5358221)
chr4 (404-521)||(30873893-30874010)
chr4 (401-507)||(27560628-27560733)
chr4 (401-495)||(51534234-51534327)
chr4 (401-495)||(18693730-18693823)
[»] chr8 (4 HSPs)
chr8 (400-522)||(28602613-28602735)
chr8 (401-511)||(15925525-15925635)
chr8 (401-509)||(4706151-4706259)
chr8 (423-471)||(18983071-18983119)
[»] scaffold0002 (4 HSPs)
scaffold0002 (396-493)||(10306-10403)
scaffold0002 (403-522)||(406455-406574)
scaffold0002 (478-522)||(412530-412574)
scaffold0002 (403-522)||(423827-423945)
[»] scaffold0713 (1 HSPs)
scaffold0713 (423-522)||(1289-1388)
[»] scaffold0014 (1 HSPs)
scaffold0014 (400-522)||(115262-115384)
[»] scaffold0012 (1 HSPs)
scaffold0012 (401-521)||(233054-233174)
[»] scaffold0654 (2 HSPs)
scaffold0654 (400-520)||(3957-4077)
scaffold0654 (400-520)||(5309-5431)
[»] scaffold0406 (1 HSPs)
scaffold0406 (399-501)||(4129-4229)
[»] scaffold0007 (1 HSPs)
scaffold0007 (423-469)||(61210-61256)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 47 - 522
Target Start/End: Complemental strand, 16101798 - 16101322
Alignment:
Q  47 tcaacatgaacgccataagtacggaccaaaccacgacctctttgactagggtcttaaggttggg-cagtaaacccataaggaattatcttcacttctagt 145  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||||| |  |||||    
T  16101798 tcaacatgaacgccataagtacggaccaaaccacaacctctttgactagggccttaaggtttggacagtaaacccataaggaattatcttcccc-ctagt 16101700  T
Q  146 ggtgatcatagaattgggtgacatccacaccgaatgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaa 245  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||  |||| |||||| ||||| |||||||||| |||| ||||||||||||| |     
T  16101699 ggtgatcataaaattgggtgacatcctcaccgaatgaaagaaaattgaccaaaattaggacaagacaacaaacaaagtaagaccaatcaaagaccaaaag 16101600  T
Q  246 atataataagatcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctat 345  Q
    | |||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||    
T  16101599 aaataacaagattggacaacaaatgacactaccataggatgcaaatagatttttgcaagtaaatggtgccgcagttcacaatttactaacaagaatctat 16101500  T
Q  346 tttcattctatgtctgcagctattaggacctacaacc-gagctctgataccaactttgtcacgacccaaaattcaatttcgtgaccggcacacgaactag 444  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  16101499 tttcattctatgtctgcagctagtaggacctacaaccagagctctgataccaactttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactag 16101400  T
Q  445 agcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 522  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||    
T  16101399 agcatcctagtccggcaagcctattgactacacttgacaaactataatttaaacaattttcaagttgactttcactta 16101322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 64 - 522
Target Start/End: Complemental strand, 14655306 - 14654847
Alignment:
Q  64 agtacggaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattggg 163  Q
    |||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| || ||  ||| |||||||||||||| |||||||||||    
T  14655306 agtacggaccgaaacacgaactctttgactaaggtcttaaggttgggcagtaaacccataagaaactaatttcccttctagtggtgataatagaattggg 14655207  T
Q  164 tgacatccacaccgaatgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggaca 263  Q
    ||||| || || ||||||||||||||||||  ||||||||||||||||| |||||||| | | |||| ||||||||||| | | |||||||||| |||||    
T  14655206 tgacaccctcatcgaatgaaagaaaattgaccaaaaataggacgagacaacaaacaaaataaaacaattcaaagaccaaaagagataataagattggaca 14655107  T
Q  264 acaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgca 363  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14655106 acaaatgacactaccatagaatccaaatagatttttgcaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcgttctatgtctgca 14655007  T
Q  364 gctattaggacctacaaccgagctctgataccaactttgtcacgaccc-aaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaa 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  14655006 gctattaggacctacaaccgagctctgataccaactttgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaa 14654907  T
Q  463 gcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 522  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  14654906 gcctaatgacaacacttgacaaactataatttaaataattttcaaattgactttcactta 14654847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 16104900 - 16104778
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16104900 ttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgacaaactataatttaaaca 16104801  T
Q  500 attttcaaattgactttcactta 522  Q
    |||||||||||||||||||||||    
T  16104800 attttcaaattgactttcactta 16104778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 401 - 534
Target Start/End: Original strand, 19656889 - 19657022
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19656889 tgtcacgacccaagattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacaatccttgacaaactataatttaaacaa 19656988  T
Q  501 ttttcaaattgactttcacttatgatgatgtcca 534  Q
    |||||||||| |||||||||||| ||||| ||||    
T  19656989 ttttcaaatttactttcacttataatgatatcca 19657022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 401 - 522
Target Start/End: Complemental strand, 14650969 - 14650847
Alignment:
Q  401 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14650969 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14650870  T
Q  500 attttcaaattgactttcactta 522  Q
    |||||||||||||||||||||||    
T  14650869 attttcaaattgactttcactta 14650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 401 - 522
Target Start/End: Complemental strand, 14660760 - 14660638
Alignment:
Q  401 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14660760 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14660661  T
Q  500 attttcaaattgactttcactta 522  Q
    |||||||||||||||||||||||    
T  14660660 attttcaaattgactttcactta 14660638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 17478215 - 17478336
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||     
T  17478215 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagccaattgacaacacttgacaaactataattcaaacat 17478314  T
Q  501 ttttcaaattgactttcactta 522  Q
    ||| ||||||||||||||||||    
T  17478315 tttccaaattgactttcactta 17478336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 401 - 515
Target Start/End: Original strand, 29287704 - 29287817
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  29287704 tgtcacgacccaaaattcacgatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgac-aactataatttaaacaa 29287802  T
Q  501 ttttcaaattgactt 515  Q
    ||||||| |||||||    
T  29287803 ttttcaatttgactt 29287817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 17652807 - 17652875
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 469  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  17652807 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 17652875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 472
Target Start/End: Original strand, 47050059 - 47050130
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 472  Q
    |||||||||||||||||||    |||||| ||| ||| ||||||| |||||||||||| ||||| |||||||    
T  47050059 tgtcacgacccaaaattcacaaccgtgactggcgcacaaactagaacatcctagtccgacaagcatattgac 47050130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 78 - 522
Target Start/End: Original strand, 5518656 - 5519096
Alignment:
Q  78 cacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccg 177  Q
    |||||||||||| |||| ||| ||| ||||||||     |||||||||||||||  ||| |||||||||||||||||||||||||   |||||   || |    
T  5518656 cacgacctctttaactaaggttttacggttgggcg----acccataaggaattaatttcccttctagtggtgatcatagaattggagaacatcattactg 5518751  T
Q  178 aatgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactac 277  Q
    |||||||||||| |||  ||| ||| ||||||||  ||||||||||||||||| ||||||||||| | | |||||||||| ||||||||||| |||||||    
T  5518752 aatgaaagaaaactgaccaaatataagacgagacgacaaacaaagtgagacaattcaaagaccaaaagaaataataagattggacaacaaataacactac 5518851  T
Q  278 catagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggaccta 377  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  5518852 catagaatgcaaatagattcttgcaagtaaatggtgccgcggttcacaatttactagcaagaatctattttaattctatgtctgcagttattaggaccta 5518951  T
Q  378 caaccgagctctgataccaactttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaaccc 477  Q
    |||||| |||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||| |||| ||||||||||||||||||||| || |    
T  5518952 caaccgggctctgataccaactttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcatagtccggcaagcctattgacgacac 5519051  T
Q  478 ttgacaaactataatttaaacaattttcaaattgactttcactta 522  Q
    || |||||||||||||||||||||||| |||| ||  ||||||||    
T  5519052 ttaacaaactataatttaaacaatttttaaatcgaaattcactta 5519096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 38979302 - 38979104
Alignment:
Q  38 ctacgttcgtcaacatgaacgccataagtacggaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttca 137  Q
    |||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  38979302 ctacgtccgtcaacatgaacgacataagtgcagaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccattaggaattatcttcc 38979203  T
Q  138 cttctagtggtgatcatagaattgggtgacatccacaccgaatgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaag 237  Q
    |||||||||||||| || |||||||||||||| | |||||||||||||||||||||  |||||||| |||||||    ||||||||||||||| ||||||    
T  38979202 cttctagtggtgataattgaattgggtgacatactcaccgaatgaaagaaaattgaccaaaaatagaacgagac----aacaaagtgagacaattcaaag 38979107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 38978649 - 38978534
Alignment:
Q  249 taataagatcggacaacaaatgacactaccatagaatgcaaatagattttt-gaaagtaaatggtgccgcggttcacaatttactagcaagaatctattt 347  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  38978649 taataagattgaacaacaaatgacactaccatagaatgcaagtagattttttgcaagtaaatggtgccgcggctcacaatttactagcaagaatctattt 38978550  T
Q  348 tcattctatgtctgca 363  Q
    ||| ||| ||||||||    
T  38978549 tcactctgtgtctgca 38978534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 401 - 509
Target Start/End: Complemental strand, 42786185 - 42786077
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    ||||||||||||||||| |   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  42786185 tgtcacgacccaaaatttataatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaacaa 42786086  T
Q  501 ttttcaaat 509  Q
    |||| ||||    
T  42786085 tttttaaat 42786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 522
Target Start/End: Original strand, 27197778 - 27197902
Alignment:
Q  399 tttgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaa 497  Q
    ||||||||||||||||| ||||   |||||| |||| ||||||||||| ||||||||| ||||||| ||| ||||||| |||||||||||||||| ||||    
T  27197778 tttgtcacgacccaaaaattcacaatcgtgatcggcgcacgaactagaacatcctagttcggcaagtctaatgacaacacttgacaaactataatataaa 27197877  T
Q  498 caattttcaaattgactttcactta 522  Q
     |||||| |||||||||||||||||    
T  27197878 taatttttaaattgactttcactta 27197902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 521
Target Start/End: Complemental strand, 15599535 - 15599416
Alignment:
Q  403 tcacgacccaaaat-tcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaat 501  Q
    |||||||||||||  ||||  ||||||| | | ||||||||||| ||||||||| |||||||||||||||| || |||||||  | | |||||| || ||    
T  15599535 tcacgacccaaaaactcaaaatcgtgacggacgcacgaactagaacatcctagttcggcaagcctattgacgacacttgacacgcaaaaatttagactat 15599436  T
Q  502 tttcaaattgactttcactt 521  Q
    || ||| |||| ||||||||    
T  15599435 ttccaatttgaatttcactt 15599416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 85 - 418
Target Start/End: Complemental strand, 76992 - 76660
Alignment:
Q  85 tctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccgaatgaaa 184  Q
    ||||| |||| ||| ||||||||||||| |||| ||||||| |||||  ||| |||||||||| |||| | | | ||||||||| || |||  ||||||     
T  76992 tctttaactaaggttttaaggttgggcaataaatccataagaaattaatttcccttctagtggagatcttggtaatgggtgacaccctcactaaatgaag 76893  T
Q  185 gaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactaccatagaa 284  Q
    |||||||||   || | ||||| ||||  |||| | |||||||||||||||||||||| | | || | ||||| | |||| || | ||||||||| | ||    
T  76892 gaaaattgactgaataaaggacaagacgacaaa-atagtgagacaaatcaaagaccaaaagaaatcacaagattgaacaataagtaacactaccacataa 76794  T
Q  285 tgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccga 384  Q
    ||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  76793 tgctaatagattttcgcaagtaaatggtgtcgcggttcacaatttactagcaagaatctattttcattctatgtctgcacctattaggacctactaccat 76694  T
Q  385 gctctgataccaactttgtcacgacccaaaattc 418  Q
    ||||||||||||||||||||||||  ||||||||    
T  76693 gctctgataccaactttgtcacgattcaaaattc 76660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 385 - 517
Target Start/End: Original strand, 7688409 - 7688541
Alignment:
Q  385 gctctgataccaactttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaa 484  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7688409 gctctgataccaactttgtcacgacctaaaattcaatttcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacccttgacaa 7688508  T
Q  485 actataatttaaacaattttcaaattgactttc 517  Q
    |||||||||||||||||||||||||||||||||    
T  7688509 actataatttaaacaattttcaaattgactttc 7688541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 5705065 - 5705186
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    ||||||||||||||||||||| ||||||||||| | |||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5705065 tgtcacgacccaaaattcaatatcgtgaccggcgctcgaactaagacatcctagtccggcaagcctattgacgacccttgacaaactataatttaaacaa 5705164  T
Q  501 ttttcaaattgactttcactta 522  Q
    |||||||| |||||||||||||    
T  5705165 ttttcaaactgactttcactta 5705186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 401 - 522
Target Start/End: Complemental strand, 28104514 - 28104392
Alignment:
Q  401 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||| ||||  |||||||||||| || |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||||| | |    
T  28104514 tgtcacgacccaaaaattcacattcgtgaccggcgcatgaactagaacatcctagtccggcaagcctaatgacgacacttgacaaactataatttagata 28104415  T
Q  500 attttcaaattgactttcactta 522  Q
    | |||||||||||||||||||||    
T  28104414 aatttcaaattgactttcactta 28104392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 28058009 - 28058131
Alignment:
Q  401 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28058009 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28058108  T
Q  500 attttcaaattgactttcactta 522  Q
    | ||||||||| |||||||||||    
T  28058109 aatttcaaatttactttcactta 28058131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 28068434 - 28068556
Alignment:
Q  401 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28068434 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28068533  T
Q  500 attttcaaattgactttcactta 522  Q
    | ||||||||| |||||||||||    
T  28068534 aatttcaaatttactttcactta 28068556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 7685331 - 7685246
Alignment:
Q  16 cattaactactcttacaaccaa-ctacgttcgtcaacatgaacgccataagtacggaccaaaccacgacctctttgactagggtct 100  Q
    |||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  7685331 cattaactgctcttacaaccaagctacgtccgtcaacatgaacaccataagtaccgaccaaaccacgacctctttgactagggtct 7685246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 401 - 507
Target Start/End: Complemental strand, 19435710 - 19435605
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| ||| |||| |||| |||||||| || |||||| |||||||||||||||||    
T  19435710 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctaatccgacaagtctattgacgacacttgac-aactataatttaaacaa 19435612  T
Q  501 ttttcaa 507  Q
    |||||||    
T  19435611 ttttcaa 19435605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 17954288 - 17954336
Alignment:
Q  423 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 471  Q
    |||| |||||||||||||||||| ||| |||  ||||||||||||||||    
T  17954288 tcgtaaccggcacacgaactagaacattctaacccggcaagcctattga 17954336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 257 - 413
Target Start/End: Complemental strand, 27684874 - 27684718
Alignment:
Q  257 tcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctat 356  Q
    ||||||||||||||| ||||||||||| | | ||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  27684874 tcggacaacaaatgagactaccatagagttctaatagctttttgcgagtaaatggtgccgcggttcacaatttactagcaaaaatctattatcactctat 27684775  T
Q  357 gtctgcagctattaggacctacaaccgagctctgataccaactttgtcacgacccaa 413  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||    
T  27684774 gtctgcagctatttggacctaaaaccgggctctgataccaactttgtcacgacccaa 27684718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 399 - 522
Target Start/End: Complemental strand, 33063812 - 33063689
Alignment:
Q  399 tttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 498  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  33063812 tttgtcacgacccaaaattcaatatcatgaccggcgtacgaactagagcaccctagtccggcaagcctattgacgacacttgacaaactataatttaaac 33063713  T
Q  499 aattttcaaattgactttcactta 522  Q
    ||||||||||||||||||||||||    
T  33063712 aattttcaaattgactttcactta 33063689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 413 - 523
Target Start/End: Complemental strand, 30131025 - 30130915
Alignment:
Q  413 aaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattga 512  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30131025 aaattcaatttcgtgatcggcgcacgaactagagcttcctagtccggaaagcctattgacgacccttgacaaactataatttaaacaattttcaaattga 30130926  T
Q  513 ctttcacttat 523  Q
    |||||||||||    
T  30130925 ctttcacttat 30130915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 401 - 522
Target Start/End: Complemental strand, 27527946 - 27527824
Alignment:
Q  401 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||| ||||   ||||||||| | ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  27527946 tgtcacgacccaaaaattcacaatcgtgaccgacgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 27527847  T
Q  500 attttcaaattgactttcactta 522  Q
    |||||||||||||||||||||||    
T  27527846 attttcaaattgactttcactta 27527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 401 - 535
Target Start/End: Complemental strand, 33056334 - 33056197
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt---gacaacccttgacaaactataatttaaa 497  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||||| |||||||||   ||| || |||||||||||||||||||||    
T  33056334 tgtcaagacccaaaattcaatatcgtgaccggcgcacgaactagagtaccctagtccggtaagcctattgacgacgacacttgacaaactataatttaaa 33056235  T
Q  498 caattttcaaattgactttcacttatgatgatgtccat 535  Q
    ||||||| |||||||||||||||||  ||||| |||||    
T  33056234 caatttttaaattgactttcacttaaaatgatatccat 33056197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 15969961 - 15970066
Alignment:
Q  410 ccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaat 509  Q
    ||||||||||   ||||||||||| |||||| |||| |||| ||| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||    
T  15969961 ccaaaattcacaatcgtgaccggcgcacgaaatagaacatcgtagcccggcaagtctaatgacgacacttgacaaactataatttaaacaattttcaaat 15970060  T
Q  510 tgactt 515  Q
    ||||||    
T  15970061 tgactt 15970066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 401 - 506
Target Start/End: Complemental strand, 28041408 - 28041304
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||| |||| ||||||| || |||| | |||||||||||||||||    
T  28041408 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggtaagcttattgacgacacttggc-aactataatttaaacaa 28041310  T
Q  501 ttttca 506  Q
    ||||||    
T  28041309 ttttca 28041304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 22014702 - 22014634
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 469  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  22014702 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 22014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 404 - 521
Target Start/End: Complemental strand, 6952903 - 6952786
Alignment:
Q  404 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 503  Q
    |||||||||||||| ||  || |||||||  ||| ||||||| || ||||||  | ||||| ||||||| || |||| ||||||||||||||||||||||    
T  6952903 cacgacccaaaatttaaaatcctgaccggtgcacaaactagaacaacctagtatgacaagcttattgacgacacttggcaaactataatttaaacaattt 6952804  T
Q  504 tcaaattgactttcactt 521  Q
    | ||||| ||||||||||    
T  6952803 ttaaattaactttcactt 6952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 472
Target Start/End: Original strand, 25477664 - 25477735
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 472  Q
    ||||||||||||||| ||||   |||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  25477664 ttgtcacgacccaaa-ttcacaatcgtaaccggcgcacgaactagaacatcctagtccggcaagcctattgac 25477735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 16692837 - 16692888
Alignment:
Q  295 tttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctatt 346  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  16692837 tttttgaaagtaaacggtgccgtggttcacaatttactagcaaaaatctatt 16692888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 14011732 - 14011684
Alignment:
Q  423 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 471  Q
    |||||| |||| ||||||||||| ||| |||| ||||||||||||||||    
T  14011732 tcgtgatcggcgcacgaactagaacattctagcccggcaagcctattga 14011684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 31394047 - 31394015
Alignment:
Q  84 ctctttgactagggtcttaaggttgggcagtaa 116  Q
    ||||||||||||||||||||||||||| |||||    
T  31394047 ctctttgactagggtcttaaggttgggaagtaa 31394015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 401 - 522
Target Start/End: Complemental strand, 10416641 - 10416520
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  10416641 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacacttgacaaactacaatttaaacaa 10416542  T
Q  501 ttttcaaattgactttcactta 522  Q
    ||||||||||||||||||||||    
T  10416541 ttttcaaattgactttcactta 10416520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 401 - 534
Target Start/End: Complemental strand, 4698597 - 4698464
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  4698597 tgtcacgacccaaaattcaatttcgtgaccggcgcatgaactagaacatcctagtccggcaagtctattaacgacccttgacaaactataatttaaacaa 4698498  T
Q  501 ttttcaaattgactttcacttatgatgatgtcca 534  Q
    ||||||||||||||||||||| | ||||| ||||    
T  4698497 ttttcaaattgactttcacttgtaatgatatcca 4698464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 9310540 - 9310639
Alignment:
Q  313 gccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctctgataccaactttgtcacgaccca 412  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  9310540 gccgcggttcacaatttactagcaagaatctattttcattc-atgtctgcagctattaggacctacaaccgggctctgatatcaactttgtcacgaccca 9310638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 509
Target Start/End: Original strand, 808176 - 808285
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  808176 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaaca 808275  T
Q  500 attttcaaat 509  Q
    ||||| ||||    
T  808276 atttttaaat 808285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 401 - 507
Target Start/End: Complemental strand, 2588533 - 2588428
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    |||||||||||||||||||   |||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  2588533 tgtcacgacccaaaattcacaatcgtgaacggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttggc-aactatagtttaaacaa 2588435  T
Q  501 ttttcaa 507  Q
    |||||||    
T  2588434 ttttcaa 2588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 79 - 317
Target Start/End: Original strand, 9305879 - 9306115
Alignment:
Q  79 acgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccga 178  Q
    ||||||||||| |||| ||| |||||||||| || ||||| ||||||||||||  ||| |||||||||| |||| | | | ||||||||| |  |||  |    
T  9305879 acgacctctttaactaaggt-ttaaggttggccaataaactcataaggaattaatttcccttctagtggagatcttggtaatgggtgacaccttcacaaa 9305977  T
Q  179 atgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactacc 278  Q
    ||| | |||||||||   || ||||||| ||||  |||| | |||||||| ||||||| |||||  || || | ||||| ||||||||| |||||| |||    
T  9305978 atgcaggaaaattgaccgaatataggacaagacgacaaa-agagtgagaccaatcaaaaaccaaataaaatcacaagattggacaacaagtgacacaacc 9306076  T
Q  279 atagaatgcaaatagatttttgaaagtaaatggtgccgc 317  Q
     |||||||| |||||||||||| ||||||||||||||||    
T  9306077 gtagaatgctaatagatttttgcaagtaaatggtgccgc 9306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 44324810 - 44324742
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 469  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  44324810 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 44324742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 45333356 - 45333308
Alignment:
Q  423 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 471  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  45333356 tcgtgaccggcgcacgaactagaacattctagcccggcaagcctattga 45333308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 20702588 - 20702622
Alignment:
Q  379 aaccgagctctgataccaactttgtcacgacccaa 413  Q
    ||||| |||||||||||||||||||||||||||||    
T  20702588 aaccgggctctgataccaactttgtcacgacccaa 20702622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 472
Target Start/End: Original strand, 10481980 - 10482055
Alignment:
Q  396 aactttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 472  Q
    ||||||||||||||||||||||| |  ||||||||| || || |||||  ||| |||||||| ||||||||| ||||    
T  10481980 aactttgtcacgacccaaaattcta-atcgtgaccgacatacaaactaatgcaacctagtccagcaagcctaatgac 10482055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 28804255 - 28804133
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||||    
T  28804255 ttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagtctattgatgacacttgacaaactataatttaaaca 28804156  T
Q  500 attttcaaattgactttcactta 522  Q
    ||||| ||||||  |||||||||    
T  28804155 atttttaaattgtttttcactta 28804133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 390 - 522
Target Start/End: Complemental strand, 26525503 - 26525371
Alignment:
Q  390 gataccaactttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactat 489  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| | | |||| ||| |||| |||||||| || |||||||||||||    
T  26525503 gataccaactttgtcacgaccaaaaattcaatatcgtgaccggcgcacgaactagaactttctagcccgacaagtctattgacgacacttgacaaactat 26525404  T
Q  490 aatttaaacaattttcaaattgactttcactta 522  Q
    ||||| || | ||||||| ||||||| ||||||    
T  26525403 aatttgaaaatttttcaatttgacttccactta 26525371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 36263730 - 36263778
Alignment:
Q  423 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 471  Q
    ||||||||||| ||||||||||| |||  ||| ||||||||||||||||    
T  36263730 tcgtgaccggcgcacgaactagaacattttagcccggcaagcctattga 36263778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 5358102 - 5358221
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    |||||||||||||||||  ||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  5358102 ttgtcacgacccaaaatctaaaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgacaaactataatttaaaca 5358201  T
Q  500 attttcaaa-ttgactttca 518  Q
    ||||||||| ||||||||||    
T  5358202 attttcaaatttgactttca 5358221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 404 - 521
Target Start/End: Original strand, 30873893 - 30874010
Alignment:
Q  404 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 503  Q
    |||| ||||||||||||  ||||||||||| ||| ||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  30873893 cacggcccaaaattcaaaatcgtgaccggcgcacaaactagaacatcttagtccggcaagcctattgacgacacttgacaaactataatttaaacaattt 30873992  T
Q  504 tcaaattgactttcactt 521  Q
    | |||||||| |||||||    
T  30873993 ttaaattgaccttcactt 30874010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 401 - 507
Target Start/End: Original strand, 27560628 - 27560733
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    ||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||| |||||||||||||||| || |||| | |||||||||||||||||    
T  27560628 tgtcaggacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagcctattgacgacacttggc-aactataatttaaacaa 27560726  T
Q  501 ttttcaa 507  Q
    |||||||    
T  27560727 ttttcaa 27560733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 401 - 495
Target Start/End: Complemental strand, 51534327 - 51534234
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 495  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |||||| ||||||||||||    
T  51534327 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgaccacacttgac-aactataattta 51534234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 401 - 495
Target Start/End: Original strand, 18693730 - 18693823
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 495  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || | |||| ||||||||||||    
T  18693730 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgacgacacatgac-aactataattta 18693823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 400 - 522
Target Start/End: Original strand, 28602613 - 28602735
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||||||||   ||||||||||| |||||| |||| ||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  28602613 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaattagaacatcctagtccggcaagcctattaacgacacttgacaaactataatttaaaca 28602712  T
Q  500 attttcaaattgactttcactta 522  Q
    |||||||||| ||  ||||||||    
T  28602713 attttcaaatcgaaattcactta 28602735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 401 - 511
Target Start/End: Complemental strand, 15925635 - 15925525
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    ||||||||||||||||| ||| ||||||||||| ||| || ||||||||||||||||| ||||||||||||   | ||||| || |||||||||||||||    
T  15925635 tgtcacgacccaaaatttaatatcgtgaccggcgcacaaattagagcatcctagtccgtcaagcctattgatggcacttgataacctataatttaaacaa 15925536  T
Q  501 ttttcaaattg 511  Q
    |||||||||||    
T  15925535 ttttcaaattg 15925525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 401 - 509
Target Start/End: Original strand, 4706151 - 4706259
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    |||||||||||||||||||   ||||||||||| ||| ||||||| |||||||||||||||||||  ||||| || ||| ||||||||||||||||||||    
T  4706151 tgtcacgacccaaaattcacaatcgtgaccggcgcacaaactagaacatcctagtccggcaagcccgttgacgacacttaacaaactataatttaaacaa 4706250  T
Q  501 ttttcaaat 509  Q
    |||| ||||    
T  4706251 tttttaaat 4706259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 18983119 - 18983071
Alignment:
Q  423 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 471  Q
    ||||||||||| ||||||||||| ||| ||||  |||||||||||||||    
T  18983119 tcgtgaccggcgcacgaactagaacattctagctcggcaagcctattga 18983071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 396 - 493
Target Start/End: Complemental strand, 10403 - 10306
Alignment:
Q  396 aactttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatt 493  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  10403 aactttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgatgacacttgacaaactataatt 10306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 403 - 522
Target Start/End: Original strand, 406455 - 406574
Alignment:
Q  403 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 502  Q
    ||||||||||||||||||  |||||| |||| ||||||||||| |||||| ||| |  || ||||||||| |  ||||||||||||||||||||| ||||    
T  406455 tcacgacccaaaattcaaaatcgtgatcggcgcacgaactagaacatccttgtcagtaaaacctattgacgaaacttgacaaactataatttaaataatt 406554  T
Q  503 ttcaaattgactttcactta 522  Q
    || |||||||||||||||||    
T  406555 tttaaattgactttcactta 406574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 522
Target Start/End: Original strand, 412530 - 412574
Alignment:
Q  478 ttgacaaactataatttaaacaattttcaaattgactttcactta 522  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||    
T  412530 ttgagaaactataatttaaataatttttaaattgactttcactta 412574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 522
Target Start/End: Original strand, 423827 - 423945
Alignment:
Q  403 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 502  Q
    |||||||||||||||||   | |||| |||  ||| ||||| | ||| ||||||||  ||  |||||||| |  |||||||||||||| |||||||||||    
T  423827 tcacgacccaaaattcacaattgtgatcggtgcacaaactaaaacattctagtccgaaaaatctattgacgaaacttgacaaactata-tttaaacaatt 423925  T
Q  503 ttcaaattgactttcactta 522  Q
    || ||||||| |||||||||    
T  423926 tttaaattgattttcactta 423945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 423 - 522
Target Start/End: Complemental strand, 1388 - 1289
Alignment:
Q  423 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 522  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1388 tcgtgaccggcgcacgaactagaacatcctagtccggaaagcctaatgacaacacttgacaaactataatttaaataattttcaaattgacttacactta 1289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 522
Target Start/End: Original strand, 115262 - 115384
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||||||||   || ||| |||| |||||||||||  |||||| || |||||| |||||||| || ||||||| |||||||||||||||    
T  115262 ttgtcacgacccaaaattcacaatcatgatcggcgcacgaactagaatatcctaatcaggcaagtctattgacgacacttgacacactataatttaaaca 115361  T
Q  500 attttcaaattgactttcactta 522  Q
    ||||||||||||| |||||||||    
T  115362 attttcaaattgattttcactta 115384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 401 - 521
Target Start/End: Original strand, 233054 - 233174
Alignment:
Q  401 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 500  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||||||| || |||| | || |    
T  233054 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagtctattgacaacacttgacaaattaaaattcagacta 233153  T
Q  501 ttttcaaattgactttcactt 521  Q
    ||| ||| |||||||||||||    
T  233154 tttccaatttgactttcactt 233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 520
Target Start/End: Original strand, 3957 - 4077
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 499  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| ||||| || || |||| || |||||||||||||||    
T  3957 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattaacgacacttggcacactataatttaaaca 4056  T
Q  500 attttcaaattgactttcact 520  Q
    ||||| ||||||| |||||||    
T  4057 atttttaaattgattttcact 4077  T

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Target: scaffold0654; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 400 - 520
Target Start/End: Original strand, 5309 - 5431
Alignment:
Q  400 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaac--tataatttaaa 497  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| |||||||| || ||||||| ||  |||||||||||    
T  5309 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattgacgacacttgacacactatataatttaaa 5408  T
Q  498 caattttcaaattgactttcact 520  Q
    ||||||| ||||||| |||||||    
T  5409 caatttttaaattgattttcact 5431  T

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Target: scaffold0406 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 399 - 501
Target Start/End: Complemental strand, 4229 - 4129
Alignment:
Q  399 tttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 498  Q
    |||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | |||||||||||||||    
T  4229 tttgtcacgacccaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagtccagcaagcctattgacgacacttggc-aactataatttaaac 4132  T
Q  499 aat 501  Q
    |||    
T  4131 aat 4129  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 469
Target Start/End: Complemental strand, 61256 - 61210
Alignment:
Q  423 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 469  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  61256 tcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 61210  T

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