View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_high_11 (Length: 478)
Name: NF17303_high_11
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 287 - 463
Target Start/End: Complemental strand, 31929327 - 31929151
Alignment:
| Q |
287 |
ctaattgaacaaaatgttagtctacattatgaagaaaaataatgtattattacatccatatttttcatgatccataaattattcaagagataaaaataaa |
386 |
Q |
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| T |
31929327 |
ctaattgaacaaaatgttagtctacattatgaagaaaaataatgtattattacatccaaatttttcatgatccataaattattcaagagagaaaaataaa |
31929228 |
T |
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| Q |
387 |
atgaattcattatgttgcaggacctgtttaagacaagaagggaaagtaattttgccgttaagcgaaggtgaccctac |
463 |
Q |
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| T |
31929227 |
atgaattcattatgttgcaggacctgtttaagacaagaagggaaagttattttgccgttaagagaaggtgaccctac |
31929151 |
T |
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Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 54 - 240
Target Start/End: Complemental strand, 31929512 - 31929326
Alignment:
| Q |
54 |
agtttaagagttaacaaattcactacgattccagcccaataaacatgttttcattttcgagttaacttaattggactttatagtcgagtcaactcaaaat |
153 |
Q |
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| T |
31929512 |
agtttaagagttaacaaattcactacgagtccatccgagtaagcttggtttcattttcaagttaacttaattggagtttatagtcgagtcaactcaaaat |
31929413 |
T |
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| Q |
154 |
tgatacctaaacatacgatcctacgagttaactcgtgattttaactacctttatcaaaacataacaagattgtcaaactcctactct |
240 |
Q |
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| T |
31929412 |
tgatacctaaacatacgatcctacgagttaactcgtgattttaacaacctttatcaaaacataacaagattgtcaaactccaactct |
31929326 |
T |
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